Related Experiment Video
Updated: Oct 29, 2025

05:37
Single-Molecule Fluorescence Visualization of DNA Polymerase Dynamics at G-Quadruplexes
Published on: April 4, 2025
922
DNA G-quadruplex structures: more than simple roadblocks to transcription?
Jenna Robinson1,2, Federica Raguseo1,2, Sabrina Pia Nuccio1,2
1Imperial College London, Chemistry Department, Molecular Sciences Research Hub, 82 Wood Lane, London W12 0BZ, UK.
Nucleic Acids Research
|July 13, 2021
Summary
G-quadruplexes (G4s) in gene promoters are more than just transcriptional roadblocks. This review challenges the simplistic
Area of Science:
- Molecular Biology
- Genetics
- Epigenetics
Background:
- G-quadruplex (G4) DNA structures in gene promoters have been studied for over 20 years for their role in gene expression regulation.
- Small molecules targeting G4s have advanced understanding of their role in transcription.
- A prevailing model viewed G4s as simple repressors of transcription by blocking polymerase movement.
Purpose of the Study:
- To challenge the simplistic model of G4s as mere transcriptional roadblocks or 'off switches'.
- To present evidence that G4 formation regulates gene expression at multiple levels.
- To highlight G4s as key regulatory elements influencing epigenetic marks and chromatin architecture.
Main Methods:
- Review of existing scientific literature on G-quadruplex structures and gene expression.
- Analysis of studies investigating the role of G4s in transcription regulation.
- Synthesis of evidence regarding G4s' impact on epigenetic modifications and chromatin.
Main Results:
- Recent studies provide substantial evidence against the simplistic model of G4s as solely transcriptional repressors.
- G4 formation can influence gene expression through mechanisms beyond blocking polymerase processivity.
- G4s act as regulatory elements that can alter epigenetic landscapes and chromatin organization.
Conclusions:
- The role of G-quadruplexes in gene regulation is complex and multifaceted, not limited to transcriptional repression.
- G4s are crucial regulatory elements that interact with epigenetic machinery and chromatin structure.
- Revisiting the understanding of G4s is essential for a comprehensive view of gene expression control.
Related Concept Videos
Cooperative Binding of Transcription Regulators
6.8K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.8K
Cooperative Binding of Transcription Regulators
2.2K
2.2K
Cis-regulatory Sequences
11.0K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
11.0K
Duplication of Chromatin Structure
6.5K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
6.5K
Co-activators and Co-repressors
7.9K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.9K
RNA Polymerase II Accessory Proteins
10.0K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
10.0K

