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Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure
Published on: May 27, 2022
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes
Andrey Yurkov1, Artur Alves2, Feng-Yan Bai3
1Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124, Braunschweig, Germany. andrey.yurkov@dsmz.de.
Abstract:
The unambiguous application of fungal names is important to communicate scientific findings. Names are critical for (clinical) diagnostics, legal compliance, and regulatory controls, such as biosafety, food security, quarantine regulations, and industrial applications. Consequently, the stability of the taxonomic system and the traceability of nomenclatural changes is crucial for a broad range of users and taxonomists. The unambiguous application of names is assured by the preservation of nomenclatural history and the physical organisms representing a name. Fungi are extremely diverse in terms of ecology, lifestyle, and methods of study. Predominantly unicellular fungi known as yeasts are usually investigated as living cultures. Methods to characterize yeasts include physiological (growth) tests and experiments to induce a sexual morph; both methods require viable cultures. Thus, the preservation and availability of viable reference cultures are important, and cultures representing reference material are cited in species descriptions. Historical surveys revealed drawbacks and inconsistencies between past practices and modern requirements as stated in the International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp). Improper typification of yeasts is a common problem, resulting in a large number invalid yeast species names. With this opinion letter, we address the problem that culturable microorganisms, notably some fungi and algae, require specific provisions under the ICNafp. We use yeasts as a prominent example of fungi known from cultures. But viable type material is important not only for yeasts, but also for other cultivable Fungi that are characterized by particular morphological structures (a specific type of spores), growth properties, and secondary metabolites. We summarize potential proposals which, in our opinion, will improve the stability of fungal names, in particular by protecting those names for which the reference material can be traced back to the original isolate.
Insights
Ensuring stable fungal nomenclature is vital for science and industry. This study highlights issues with yeast typification and proposes solutions for reliable fungal naming and identification.
Area of Science:
- Mycology
- Systematic Botany
- Microbial Taxonomy
Background:
- Unambiguous fungal nomenclature is crucial for scientific communication, diagnostics, and regulatory compliance.
- The International Code of Nomenclature for Algae, Fungi, and Plants (ICNafp) requires stable and traceable taxonomic systems.
- Current practices often lead to invalid fungal species names, particularly for yeasts, due to improper typification.
Purpose of the Study:
- To address the challenges in fungal nomenclature, especially concerning culturable microorganisms like yeasts.
- To highlight the importance of viable type material for accurate fungal identification and classification.
- To propose improvements to the ICNafp for enhanced stability and traceability of fungal names.
Main Methods:
- Review of historical practices and modern requirements in fungal nomenclature.
- Analysis of typification issues in yeast taxonomy.
- Summarization of potential proposals for improving fungal name stability.
Main Results:
- Improper typification is a significant problem, leading to numerous invalid yeast species names.
- Viable cultures are essential for characterizing yeasts and other cultivable fungi.
- Existing practices do not fully meet modern taxonomic requirements.
Conclusions:
- Specific provisions are needed within the ICNafp for culturable microorganisms.
- Protecting fungal names with traceable reference material, especially original isolates, will improve taxonomic stability.
- Revisions to nomenclature rules are necessary to ensure the reliability of fungal identification and classification.
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