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Ontoclick: a web browser extension to facilitate biomedical knowledge curation.

Anthony Xu1, Aravind Venkateswaran1, Lianguizi Zhou1

  • 1School of Computer Science and Engineering, UNSW, Sydney, NSW 2052, Australia.

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Summary

Ontoclick is a new browser extension simplifying biomedical knowledge curation. This tool makes annotating text with ontology terms easier for researchers, improving biocuration accessibility.

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Area of Science:

  • Biomedical Informatics
  • Bioinformatics
  • Scientific Knowledge Management

Background:

  • Biomedical knowledge curation is crucial but often hindered by repetitive, laborious tasks.
  • A lack of user-friendly tools limits the adoption of effective biocuration practices.

Purpose of the Study:

  • To introduce Ontoclick, a novel web browser extension designed to streamline the annotation process.
  • To enhance the accessibility of biocuration for a broader range of biomedical researchers.

Main Methods:

  • Development of a web browser extension (Ontoclick).
  • Integration with web browsers to facilitate text span annotation.
  • Mapping text spans to relevant ontology terms.

Main Results:

  • Ontoclick effectively simplifies the process of annotating text with ontology terms.
  • The tool aims to increase the accessibility and adoption of biocuration practices.

Conclusions:

  • Ontoclick offers a user-friendly solution to common challenges in biomedical knowledge curation.
  • The extension has the potential to significantly benefit biomedical researchers by simplifying data annotation.