Related Experiment Video
Updated: Oct 27, 2025

Pairwise Growth Competition Assay for Determining the Replication Fitness of Human Immunodeficiency Viruses
Published on: May 4, 2015
Tradeoffs for a viral mutant with enhanced replication speed.
Matthew R Lanahan1, Robert W Maples1, Julie K Pfeiffer2
1Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX 75390-9048.
Researchers selected for faster coxsackievirus replication, identifying a VP1-F106L mutation for rapid genome release. This mutation, however, decreased viral capsid stability and mouse infectivity, revealing a replication speed versus fitness tradeoff.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- RNA viruses exhibit genetic heterogeneity due to high mutation rates, often impacting replication speed and fitness.
- The potential for viral mutations to increase replication speed in well-adapted viruses remains largely unexplored.
Purpose of the Study:
- To investigate if mutations can enhance viral replication speed in coxsackievirus B3 already adapted to cell culture.
- To identify specific mutations responsible for increased replication speed and characterize their effects on viral fitness.
Main Methods:
- Sequential passaging of coxsackievirus B3 in cultured cells to select for rapid replication.
- Genetic sequencing to identify mutations associated with the fast-replication phenotype.
- In vitro characterization of viral mutants, including genome release kinetics, capsid stability, and replication efficiency in cell culture and mice.
Main Results:
- A single mutation, VP1-F106L, in the viral capsid protein was sufficient to confer a fast-replication phenotype.
- The VP1-F106L mutation accelerated genome release during viral entry, indicating a novel infection barrier.
- Despite increased replication speed, the mutation reduced in vitro capsid stability and decreased viral replication and pathogenesis in mouse models.
Conclusions:
- A tradeoff exists between viral replication speed and overall fitness, as demonstrated by the VP1-F106L mutation.
- The selection strategy of isolating earliest viral progeny can uncover previously unrecognized viral replication cycle inefficiencies.
- This approach holds potential for studying diverse viral systems and identifying novel antiviral targets.
Related Concept Videos
Viral Mutations
Viral Recombination
Size and Structure of Viral Genomes
Viral Replication: Lytic Cycle
Viral Replication: Lysogenic Cycle
Mutations in Microorganisms

