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Updated: Oct 27, 2025

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Published on: January 27, 2019
Weight shapes the intestinal microbiome in preterm infants: results of a prospective observational study
Fardou H Heida1,2, Elisabeth M W Kooi3, Josef Wagner4
1Division of Obstetrics & Gynecology, Isala Klinieken, University of Groningen, Zwolle, the Netherlands. f.h.heida@isala.nl.
Insights
The mode of delivery impacts the early intestinal microbiome in preterm infants. Infant weight, not just age, better predicts microbiome development and maturation stages.
Area of Science:
- Neonatal microbiome research
- Infant gut health
- Microbiome development
Background:
- Intestinal microbiome composition significantly differs between preterm and term infants.
- The influence of infant-specific factors on microbiome development over time remains unclear.
Purpose of the Study:
- To identify key factors influencing intestinal microbiome development in preterm infants.
- To analyze the longitudinal changes in the preterm infant microbiome.
Main Methods:
- Analysis of clinical metadata alongside 16S rRNA amplicon sequencing of meconium and fecal samples from preterm infants up to 4 weeks.
- Inclusion of 41 infants with gestational ages of 25-30 weeks and birth weights of 430-990g.
Main Results:
- Mode of delivery influenced meconium microbiome composition, with vaginal delivery associated with Escherichia and Bacteroides, and Cesarean section linked to Staphylococcus.
- A shift in microbiome composition was observed with increasing infant weight, transitioning from Staphylococcus dominance to Enterobacteriaceae dominance.
- Cesarean section was associated with placental insufficiency and lower birth weight.
Conclusions:
- Delivery mode significantly affects the initial meconium microbiome composition in preterm infants.
- Infant weight is a more reliable indicator of intestinal microbiome maturation than postconceptional age, being less influenced by confounding infant-specific factors.
Background:
The intestinal microbiome in preterm infants differs markedly from term infants. It is unclear whether the microbiome develops over time according to infant specific factors.
Methods:
We analysed (clinical) metadata - to identify the main factors influencing the microbiome composition development - and the first meconium and faecal samples til the 4th week via 16 S rRNA amplican sequencing.
Results:
We included 41 infants (gestational age 25-30 weeks; birth weight 430-990 g. Birth via Caesarean section (CS) was associated with placental insufficiency during pregnancy and lower BW. In meconium samples and in samples from weeks 2 and 3 the abundance of Escherichia and Bacteroides (maternal faecal representatives) were associated with vaginal delivery while Staphylococcus (skin microbiome representative) was associated with CS. Secondly, irrespective of the week of sampling or the mode of birth, a transition was observed as children children gradually increased in weight from a microbiome dominated by Staphylococcus (Bacilli) towards a microbiome dominated by Enterobacteriaceae (Gammaproteobacteria).
Conclusions:
Our data show that the mode of delivery affects the meconium microbiome composition. They also suggest that the weight of the infant at the time of sampling is a better predictor for the stage of progression of the intestinal microbiome development/maturation than postconceptional age as it less confounded by various infant-specific factors.
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