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Updated: Oct 27, 2025

Automated Analysis of Dynamic Ca2+ Signals in Image Sequences
Published on: June 16, 2014
Spectral Denoising for Accelerated Analysis of Correlated Ionic Transport
Nicola Molinari1, Yu Xie1, Ian Leifer1
1John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.
Abstract:
Computation of correlated ionic transport properties from molecular dynamics in the Green-Kubo formalism is expensive, as one cannot rely on the affordable mean square displacement approach. We use spectral decomposition of the short-time ionic displacement covariance to learn a set of diffusion eigenmodes that encode the correlation structure and form a basis for analyzing the ionic trajectories. This allows systematic reduction of the uncertainty and accelerate computations of ionic conductivity in systems with a steady-state correlation structure. We provide mathematical and numerical proofs of the method's robustness and demonstrate it on realistic electrolyte materials.
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