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Applying Proteomics and Integrative "Omics" Strategies to Decipher the Chronic Kidney Disease-Related Atherosclerosis
Joanna Tracz1, Magdalena Luczak1
1European Centre for Bioinformatics and Genomics, Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznan, Poland.
Insights
Patients with chronic kidney disease (CKD) face higher risks of atherosclerosis and early death. Advanced "omics" approaches, particularly proteomics, are crucial for understanding the complex molecular causes of CKD-related atherosclerosis.
Area of Science:
- Biochemistry
- Molecular Biology
- Cardiovascular Research
Background:
- Patients with chronic kidney disease (CKD) exhibit elevated risks for atherosclerosis and premature mortality, primarily from cardiovascular events.
- Established risk factors for atherosclerosis do not fully account for the high incidence of CKD-associated atherosclerosis (CKD-A).
Purpose of the Study:
- To explore the complex molecular mechanisms driving accelerated atherosclerosis in CKD.
- To review the application of multi-omics approaches, especially proteomics, in understanding CKD-A pathogenesis.
Main Methods:
- Utilizing comprehensive proteomic approaches, including global protein profiling.
- Employing functional bioinformatics analyses to identify dysregulated pathways.
- Integrating proteomics with other omics techniques (transcriptomics, metabolomics) and physiological assays.
Main Results:
- Proteomics enables a holistic view of molecular changes in CKD-A.
- Integrative systems biology approaches offer deeper insights into disease mechanisms.
- Recent findings from global proteomic studies are summarized.
Conclusions:
- Multi-omics strategies are essential for deciphering the accelerated atherosclerosis in CKD.
- Systems biology integration is key to understanding CKD-A pathogenesis.
- Further research using these comprehensive approaches can elucidate CKD-A and related disorders.
Abstract:
Patients with chronic kidney disease (CKD) are at increased risk of atherosclerosis and premature mortality, mainly due to cardiovascular events. However, well-known risk factors, which promote "classical" atherosclerosis are alone insufficient to explain the high prevalence of atherosclerosis-related to CKD (CKD-A). The complexity of the molecular mechanisms underlying the acceleration of CKD-A is still to be defied. To obtain a holistic picture of these changes, comprehensive proteomic approaches have been developed including global protein profiling followed by functional bioinformatics analyses of dysregulated pathways. Furthermore, proteomics surveys in combination with other "omics" techniques, i.e., transcriptomics and metabolomics as well as physiological assays provide a solid ground for interpretation of observed phenomena in the context of disease pathology. This review discusses the comprehensive application of various "omics" approaches, with emphasis on proteomics, to tackle the molecular mechanisms underlying CKD-A progression. We summarize here the recent findings derived from global proteomic approaches and underline the potential of utilizing integrative systems biology, to gain a deeper insight into the pathogenesis of CKD-A and other disorders.
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