Household environmental microbiota influences early-life eczema development
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Updated: Oct 26, 2025

Noninvasive Sampling of Mucosal Lining Fluid for the Quantification of In Vivo Upper Airway Immune-mediator Levels
Published on: August 7, 2017
Le Duc Huy Ta1, Carina Jing Xuan Tay1, Christophe Lay1,2
1Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Insights
Early life exposure to diverse microbes influences allergy risk. This study found specific bacteria in house dust linked to eczema development, while a beneficial microbe may offer protection.
Area of Science:
- Microbiome research
- Allergy and immunology
- Environmental health
Background:
- Exposure to diverse microbial environments is crucial for immune development and allergy prevention.
- The impact of microbial exposure across preconception, pregnancy, and postnatal periods on childhood allergy is not well understood.
Purpose of the Study:
- To investigate the association between household environmental microbiota composition during critical developmental windows and childhood eczema.
- To identify specific microbial signatures in house dust related to eczema development.
Main Methods:
- Utilized the Singapore PREconception Study of long Term maternal and child Outcomes (S-PRESTO) cohort.
- Collected and analyzed house dust microbiota using 16S rRNA gene sequencing during preconception, pregnancy, and postnatal periods.
- Clinically assessed children for eczema at 6 and 18 months of age.
Main Results:
- Household dust in children with eczema showed a higher prevalence of human-associated bacteria (Actinomyces, Anaerococcus, Finegoldia, Micrococcus, Prevotella, Propionibacterium) across all sampling periods.
- A microbe, Planomicrobium, was found in significantly higher abundance in the home environments of control children, suggesting a protective role.
- Network correlation analysis revealed inverse relationships between Planomicrobium and the identified human-associated bacteria.
Conclusions:
- Specific human-associated bacteria in indoor environments may increase susceptibility to eczema.
- Exposure to natural environmental microbiota, like Planomicrobium, could be beneficial in modulating the indoor microbiome and potentially preventing eczema.
- Early life microbial exposures play a significant role in shaping immune responses and allergy development.
Abstract:
Exposure to a diverse microbial environment during pregnancy and early postnatal period is important in determining predisposition towards allergy. However, the effect of environmental microbiota exposure during preconception, pregnancy and postnatal life on development of allergy in the child has not been investigated so far. In the S-PRESTO (Singapore PREconception Study of long Term maternal and child Outcomes) cohort, we collected house dust during all three critical window periods and analysed microbial composition using 16S rRNA gene sequencing. At 6 and 18 months, the child was assessed for eczema by clinicians. In the eczema group, household environmental microbiota was characterized by presence of human-associated bacteria Actinomyces, Anaerococcus, Finegoldia, Micrococcus, Prevotella and Propionibacterium at all time points, suggesting their possible contributions to regulating host immunity and increasing the susceptibility to eczema. In the home environment of the control group, putative protective effect of an environmental microbe Planomicrobium (Planococcaceae family) was observed to be significantly higher than that in the eczema group. Network correlation analysis demonstrated inverse relationships between beneficial Planomicrobium and human-associated bacteria (Actinomyces, Anaerococcus, Finegoldia, Micrococcus, Prevotella and Propionibacterium). Exposure to natural environmental microbiota may be beneficial to modulate shed human-associated microbiota in an indoor environment.
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