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Uncertainty: Overview00:59

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In analytical chemistry, we often perform repetitive measurements to detect and minimize inaccuracies caused by both determinate and indeterminate errors. Despite the cares we take, the presence of random errors means that repeated measurements almost never have exactly the same magnitude. The collective difference between these measurements - observed values - and the estimated or expected value is called uncertainty. Uncertainty is conventionally written after the estimated or expected value.
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Building robust pathology image analyses with uncertainty quantification.

Jeremias Gomes1, Jun Kong2, Tahsin Kurc3

  • 1Department of Computer Science, University of Brasília, Brasília, Brazil.

Computer Methods and Programs in Biomedicine
|August 1, 2021
PubMed
Summary

This study quantifies uncertainty in digital pathology image analysis using uncertainty quantification (UQ) and sensitivity analysis (SA). Feature selection strategies improved patient grouping stability in survival analysis, enhancing confidence in digital pathology results.

Keywords:
MicroscopySensitivity analysisSurvival analysisUncertainty quantificationWhole slide image analysis

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Area of Science:

  • Digital pathology
  • Computational pathology
  • Biomedical image analysis

Background:

  • Computerized pathology image analysis is crucial for quantitative tissue characterization and aiding pathologists.
  • Uncertainty in these analyses can impact research and clinical applications.

Purpose of the Study:

  • To systematically quantify and minimize uncertainty in computer-based pathology image analysis outputs.
  • To develop methods for selecting stable features that reduce application output uncertainty.

Main Methods:

  • Employed uncertainty quantification (UQ) and sensitivity analysis (SA) methods (Variance-Based Decomposition, Morris One-At-a-Time) on large Whole Slide Imaging datasets (BRCA, LUSC).
  • Combined high-performance computing with efficient UQ/SA methods for compute-intensive studies.
  • Identified parameters and nuclear features impacting results and uncertainty.

Main Results:

  • Input parameter variations significantly affect segmentation, feature computation, and survival analysis stages.
  • Features were classified by robustness to parameter variation.
  • Feature selection strategy improved patient grouping stability in survival analysis by 17% (BRCA) and 34% (LUSC).

Conclusions:

  • The developed strategy enhances analysis robustness.
  • Sensitivity analysis (SA) and uncertainty quantification (UQ) are vital for increasing confidence in digital pathology.