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Updated: Oct 26, 2025

Identification of Alternative Splicing and Polyadenylation in RNA-seq Data
Published on: June 24, 2021
Alternative Splicing of MoPTEN Is Important for Growth and Pathogenesis in Magnaporthe oryzae
Shaowei Wang1, Hao Liang1, Yi Wei1,2,3
1College of Plant Sciences, Jilin University, Changchun, China.
Abstract:
Human PTEN, a dual-phosphatase tumor suppressor, is frequently dysregulated by alternative splicing. Fungi harbor PTEN homologs, but alternative splicing of fungal PTENs has not been reported as far as we know. Here, we described an alternative splicing case in the PTEN homolog of Magnaporthe oryzae (MoPTEN). Two splice variants of MoPTEN were detected and identified, which are resulted from an intron retention and exclusion (MoPTEN-1/2). Both proteins were different in lipid and protein phosphatase activity and in expression patterns. The MoPTEN deletion mutant (ΔMoPTEN) showed the defects in conidiation, appressorium formation, and pathogenesis. ΔMoPTEN could be completely restored by MoPTEN, but rescued partially by MoPTEN-1 in the defect of conidium and appressorium formation, and by MoPTEN-2 in the defect of invasive development. Assays to assess sensitivity to oxidative stress reveal the involvement of MoPTEN-2 in scavenging exogenous and host-derived H2O2. Taken together, MoPTEN undergoes alternative splicing, and both variants cooperatively contribute to conidium and appressorium development, and invasive hyphae growth in plant cells, revealing a novel disease development pathway in M. oryzae.
Insights
Alternative splicing of the Magnaporthe oryzae PTEN homolog (MoPTEN) produces two variants. These MoPTEN variants are crucial for fungal development, pathogenesis, and oxidative stress response, revealing a novel disease pathway.
Area of Science:
- Molecular Biology
- Mycology
- Plant Pathology
Background:
- Human PTEN, a tumor suppressor, is often dysregulated by alternative splicing.
- Alternative splicing of fungal PTEN homologs has not been previously reported.
Purpose of the Study:
- To investigate alternative splicing in the PTEN homolog of Magnaporthe oryzae (MoPTEN).
- To characterize the functional roles of MoPTEN splice variants in fungal development and pathogenesis.
Main Methods:
- Identification and characterization of MoPTEN splice variants (MoPTEN-1 and MoPTEN-2) using molecular techniques.
- Analysis of a MoPTEN deletion mutant (ΔMoPTEN) to assess its developmental and pathogenic defects.
- Functional complementation assays using wild-type MoPTEN and its splice variants.
- Oxidative stress sensitivity assays.
Main Results:
- Two MoPTEN splice variants, MoPTEN-1 and MoPTEN-2, were identified, arising from intron retention and exclusion.
- Both variants exhibit distinct lipid and protein phosphatase activities and expression patterns.
- The ΔMoPTEN mutant displayed defects in conidiation, appressorium formation, and pathogenesis.
- MoPTEN-1 partially rescued conidium and appressorium formation defects, while MoPTEN-2 partially rescued invasive development defects.
- MoPTEN-2 plays a role in scavenging hydrogen peroxide (H2O2).
Conclusions:
- Alternative splicing of MoPTEN generates functional variants that cooperatively contribute to M. oryzae development and pathogenesis.
- This study reveals a novel pathway for disease development in M. oryzae involving MoPTEN alternative splicing and oxidative stress response.
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