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Published on: February 28, 2016
Structures of full-length VanR from Streptomyces coelicolor in both the inactive and activated states
Lina J Maciunas1, Nadia Porter1, Paula J Lee1
1Department of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, PA 19102, USA.
Abstract:
Vancomycin has historically been used as a last-resort treatment for serious bacterial infections. However, vancomycin resistance has become widespread in certain pathogens, presenting a serious threat to public health. Resistance to vancomycin is conferred by a suite of resistance genes, the expression of which is controlled by the VanR-VanS two-component system. VanR is the response regulator in this system; in the presence of vancomycin, VanR accepts a phosphoryl group from VanS, thereby activating VanR as a transcription factor and inducing expression of the resistance genes. This paper presents the X-ray crystal structures of full-length VanR from Streptomyces coelicolor in both the inactive and activated states at resolutions of 2.3 and 2.0 Å, respectively. Comparison of the two structures illustrates that phosphorylation of VanR is accompanied by a disorder-to-order transition of helix 4, which lies within the receiver domain of the protein. This transition generates an interface that promotes dimerization of the receiver domain; dimerization in solution was verified using analytical ultracentrifugation. The inactive conformation of the protein does not appear intrinsically unable to bind DNA; rather, it is proposed that in the activated form DNA binding is enhanced by an avidity effect contributed by the receiver-domain dimerization.
Insights
Vancomycin resistance in bacteria is controlled by the VanR-VanS system. This study reveals how VanR protein changes shape upon activation, promoting dimerization and enhancing DNA binding to trigger resistance gene expression.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Vancomycin is a critical antibiotic, but resistance is a growing public health concern.
- Vancomycin resistance is regulated by the VanR-VanS two-component system.
- VanR acts as a transcription factor, activating resistance genes upon phosphorylation.
Purpose of the Study:
- To elucidate the structural mechanisms underlying VanR activation and DNA binding.
- To provide insights into the molecular basis of vancomycin resistance.
Main Methods:
- X-ray crystallography of full-length VanR in inactive and activated states.
- Analytical ultracentrifugation to confirm dimerization in solution.
Main Results:
- The crystal structures revealed a disorder-to-order transition of helix 4 in VanR upon phosphorylation.
- This transition facilitates dimerization of the VanR receiver domain.
- Dimerization enhances DNA binding through an avidity effect.
Conclusions:
- Phosphorylation-induced dimerization of VanR is a key step in activating vancomycin resistance.
- Structural insights can inform strategies to combat antibiotic resistance.
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