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Related Concept Videos

Ribosome Profiling02:24

Ribosome Profiling

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
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During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
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Translational Regulation01:29

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Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
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RNA-seq03:21

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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Directing Proteins to the Rough Endoplasmic Reticulum01:34

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The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
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Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
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Identification of Circular RNAs using RNA Sequencing
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Circular RNA translation, a path to hidden proteome.

Tanvi Sinha1, Chirag Panigrahi1, Debojyoti Das1,2

  • 1Institute of Life Sciences, Nalco Square, Bhubaneswar, Odisha, India.

Wiley Interdisciplinary Reviews. RNA
|August 3, 2021
PubMed
Summary

Circular RNAs (circRNAs) can translate into proteins, expanding the known proteome. This review explores circRNA translation mechanisms and the roles of these circ-proteins in health and disease.

Keywords:
IREScap-independent translationcircRNAm6Apolypeptide

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Area of Science:

  • Molecular Biology
  • Genomics
  • Proteomics

Background:

  • Messenger RNA (mRNA) typically encodes proteins, but noncoding RNAs, including circular RNAs (circRNAs), are more abundant.
  • circRNAs are increasingly recognized for their roles in gene regulation and, notably, their potential to produce proteins.
  • Features like Open Reading Frames (ORFs) and internal ribosomal entry sites (IRES) suggest circRNAs can initiate cap-independent translation.

Purpose of the Study:

  • To review the mechanisms underlying circRNA translation.
  • To highlight the significance of circRNA-encoded proteins (circ-proteins) in cellular functions and disease states.
  • To discuss methods for identifying translatable circRNAs and characterizing circ-proteins.

Main Methods:

  • Computational approaches for identifying circRNAs with coding potential.
  • Molecular biology techniques for validating circRNA translation.
  • Functional assays to characterize the roles of circ-proteins.

Main Results:

  • circRNAs possess features enabling cap-independent translation.
  • circ-proteins are involved in various cellular processes and disease pathologies.
  • Systematic identification and characterization of circ-proteins are advancing.

Conclusions:

  • circRNA translation represents a novel source of proteins, contributing to the cellular proteome.
  • Understanding circ-protein function is crucial for deciphering cellular physiology and disease.
  • Future research on circRNA translation holds promise for therapeutic applications.