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Updated: Oct 25, 2025

Quantification and Whole Genome Characterization of SARS-CoV-2 RNA in Wastewater and Air Samples
Published on: June 30, 2023
Lessons learned from SARS-CoV-2 measurements in wastewater
Mark E Sharkey1, Naresh Kumar2, Alejandro M A Mantero2
1Department of Medicine, University of Miami Miller School of Medicine, Miami, FL, USA.
Wastewater surveillance for SARS-CoV-2 RNA shows promise for early COVID-19 detection. Integrating wastewater data with human surveillance and increasing sampling frequency can improve outbreak prediction.
Area of Science:
- Environmental science
- Epidemiology
- Molecular biology
Background:
- Standardized protocols for wastewater-based surveillance (WBS) of SARS-CoV-2 are crucial for early COVID-19 outbreak detection.
- Establishing integrated WBS and human surveillance programs provides valuable insights into disease monitoring.
Purpose of the Study:
- To report lessons learned from establishing a SARS-CoV-2 WBS program integrated with human surveillance.
- To evaluate the impact of water quality, detection technologies, viral loads, and data integration on WBS effectiveness.
Main Methods:
- Implemented WBS across three university campuses, including residential dormitories and a hospital.
- Assessed water quality variability between sampling sites.
- Utilized a novel polymerase (V2G) for SARS-CoV-2 RNA detection.
- Integrated environmental (wastewater) and human surveillance data.
Main Results:
- Water quality varied significantly between sewer sampling sites, with higher variability from individual buildings.
- Detectable SARS-CoV-2 levels ranged from 10^2 to 10^6 genomic copies per liter.
- WBS detection of 100 gc/L correlated with a 4% human positivity rate, indicating WBS utility.
- Increased wastewater sampling frequency from weekly to daily could enhance early COVID-19 surge detection.
Conclusions:
- Wastewater-based surveillance is a valuable tool for monitoring SARS-CoV-2.
- Optimizing detection technology and increasing sampling frequency can improve the predictive power of WBS for COVID-19.
- Integrating environmental and human surveillance data enhances early warning capabilities for infectious disease outbreaks.
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