A proteomic and phosphoproteomic landscape of KRAS mutant cancers identifies combination therapies

Zhiwei Liu1, Yingluo Liu1, Lili Qian2

  • 1State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China; University of Chinese Academy of Sciences, Beijing, China.

Molecular Cell
|August 10, 2021
PubMed

Insights

This study maps KRAS mutant cancers, revealing three distinct subtypes. A combination of DOT1L and SHP2 inhibitors shows promise for treating a subset with poor prognosis.

Area of Science:

  • Oncology
  • Molecular Biology
  • Proteomics

Background:

  • KRAS-mutant cancers present therapeutic challenges due to complex phosphorylation signaling.
  • A comprehensive proteomic and phosphoproteomic profile of these cancers is currently lacking.

Purpose of the Study:

  • To create a proteomic and phosphoproteomic landscape of KRAS-mutant cancer cell lines.
  • To identify distinct cancer subsets and potential therapeutic strategies through integrative analysis.

Main Methods:

  • Proteomic and phosphoproteomic profiling of 43 KRAS-mutant cancer cell lines.
  • Integration of transcriptomics, proteomics, and phosphoproteomics data.
  • Analysis of drug sensitivity in relation to phosphoproteome data.

Main Results:

  • Identification of three distinct subsets of KRAS-mutant cancers with unique characteristics.
  • Discovery of potential drug combinations by integrating phosphoproteome and drug sensitivity data.
  • Validation of DOT1L and SHP2 inhibitor combination therapy for a specific subset (subset 2) linked to poor prognosis.

Conclusions:

  • This study provides a valuable resource for understanding KRAS-mutant cancer heterogeneity.
  • The identified DOT1L and SHP2 inhibitor combination offers a targeted therapeutic strategy for a subset of KRAS-mutant cancers.
  • Findings pave the way for developing novel therapeutic approaches for challenging KRAS-driven malignancies.

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