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Updated: Oct 24, 2025

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
KMT2A-ARHGEF12, a therapy related fusion with poor prognosis
Nada Assaf1, Raphael Liévin2,3, Fatiha Merabet2,3
1Department of Laboratory Medicine, Hemato-Oncologic Cytogenetics, Centre Hospitalier de Versailles, 2, rue JL Forain, 78150, Le Chesnay, France. assaf.nada@outlook.com.
Background:
The detection of KMT2A gene rearrangements have an important impact on the prognosis and management of acute leukemias. These alterations most commonly involve reciprocal translocations at specific breakpoint regions within KMT2A. To date, more than 100 translocation partner genes of KMT2A have been identified, with different effects on risk stratification.
Methods And Results:
We report the case of a mature plasmacytoid dendritic cells proliferation associated with B lymphoblasts harboring a KMT2A-ARHGEF12 fusion. This rare rearrangement, resulting from a cryptic deletion on the long arm of chromosome 11, is located outside the known major and minor breakpoint regions of KMT2A, not reported to date. The review of the few cases of KMT2A-ARHGEF12 reveals the tendency of this deletion to occur in therapy related hematologic neoplasm and confer unfavorable prognosis.
Conclusion:
This review sheds light into the rare KMT2A-ARHGEF12 fusion in leukemia. Reporting rare chimeras is essential to improve knowledge about the biological mechanism and associated clinical consequences.
Insights
This study identifies a novel KMT2A-ARHGEF12 gene fusion in leukemia, a rare rearrangement outside known breakpoints. This finding impacts understanding of therapy-related neoplasms and prognosis.
Area of Science:
- Hematology
- Oncology
- Genetics
Background:
- KMT2A gene rearrangements are crucial for acute leukemia prognosis and management.
- Over 100 KMT2A translocation partners are known, influencing risk stratification.
- Alterations typically involve specific KMT2A breakpoint regions.
Observation:
- A case of mature plasmacytoid dendritic cells proliferation with B lymphoblasts harboring a KMT2A-ARHGEF12 fusion is presented.
- This rare rearrangement results from a cryptic deletion on chromosome 11q, outside known KMT2A breakpoints.
- This specific KMT2A-ARHGEF12 fusion has not been previously reported.
Findings:
- The KMT2A-ARHGEF12 fusion is associated with therapy-related hematologic neoplasms.
- This rare fusion confers an unfavorable prognosis in leukemia patients.
- Review of existing cases highlights the clinical significance of this specific rearrangement.
Implications:
- Reporting rare gene fusions like KMT2A-ARHGEF12 enhances understanding of leukemia biology.
- Knowledge of these novel chimeras is essential for accurate diagnosis and treatment.
- Further research into rare KMT2A rearrangements can improve patient outcomes.
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