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Updated: Oct 24, 2025

Silencing of BRCA2 to Identify Novel BRCA2-regulated Biological Functions in Cultured Human Cells
Published on: August 12, 2015
The trans cell cycle effects of PARP inhibitors underlie their selectivity toward BRCA1/2-deficient cells
Antoine Simoneau1, Rosalinda Xiong1, Lee Zou1,2
1Massachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, Massachusetts 02129, USA.
Abstract:
PARP inhibitor (PARPi) is widely used to treat BRCA1/2-deficient tumors, but why PARPi is more effective than other DNA-damaging drugs is unclear. Here, we show that PARPi generates DNA double-strand breaks (DSBs) predominantly in a trans cell cycle manner. During the first S phase after PARPi exposure, PARPi induces single-stranded DNA (ssDNA) gaps behind DNA replication forks. By trapping PARP on DNA, PARPi prevents the completion of gap repair until the next S phase, leading to collisions of replication forks with ssDNA gaps and a surge of DSBs. In the second S phase, BRCA1/2-deficient cells are unable to suppress origin firing through ATR, resulting in continuous DNA synthesis and more DSBs. Furthermore, BRCA1/2-deficient cells cannot recruit RAD51 to repair collapsed forks. Thus, PARPi induces DSBs progressively through trans cell cycle ssDNA gaps, and BRCA1/2-deficient cells fail to slow down and repair DSBs over multiple cell cycles, explaining the unique efficacy of PARPi in BRCA1/2-deficient cells.
Insights
Poly (ADP-ribose) polymerase inhibitors (PARPi) cause DNA double-strand breaks (DSBs) across cell cycles in BRCA1/2-deficient cells. This progressive DNA damage explains PARPi
Area of Science:
- Molecular Biology
- Cancer Therapeutics
- DNA Repair Mechanisms
Background:
- Poly (ADP-ribose) polymerase inhibitors (PARPi) are effective against BRCA1/2-deficient tumors.
- The precise mechanism underlying PARPi's superior efficacy compared to other DNA-damaging agents remains incompletely understood.
- BRCA1/2 deficiency impairs homologous recombination repair, a critical pathway for resolving DNA damage.
Purpose of the Study:
- To elucidate the cell cycle-dependent mechanism by which PARPi induces DNA double-strand breaks (DSBs).
- To investigate why PARPi exhibits unique efficacy in BRCA1/2-deficient cancer cells.
Main Methods:
- Cellular models of BRCA1/2-deficient and proficient cancers.
- Treatment with PARP inhibitors (PARPi).
- Analysis of DNA replication, single-stranded DNA (ssDNA) gap formation, and DNA double-strand break (DSB) induction across cell cycles.
- Assessment of DNA repair pathway involvement, including ATR and RAD51.
- Flow cytometry and DNA combing techniques.
Main Results:
- PARPi induces DNA double-strand breaks (DSBs) predominantly in a trans cell cycle manner.
- PARPi traps PARP on DNA, leading to single-stranded DNA (ssDNA) gaps that persist until the subsequent S phase.
- BRCA1/2-deficient cells exhibit increased DSBs due to unrepaired ssDNA gaps, uncontrolled origin firing, and impaired RAD51 recruitment for fork repair.
Conclusions:
- PARPi triggers progressive DSBs via trans cell cycle ssDNA gaps, overwhelming repair capacity in BRCA1/2-deficient cells.
- The inability of BRCA1/2-deficient cells to manage accumulating DNA damage across multiple cell cycles underlies the heightened sensitivity to PARPi.
- This study clarifies the unique therapeutic window of PARPi in BRCA1/2-mutated cancers.
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