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Updated: Oct 24, 2025

Metagenomic Analysis of Silage
Published on: January 13, 2017
Pathogenic bacteria in cheese, raw and pasteurised milk.
Mahsa Morovati Bastam1, Mahsa Jalili1, Iraj Pakzad1
1Department of Microbiology, Faculty of Medicine, Ilam University of Medical Sciences, Ilam, Iran.
Real-time qPCR effectively detected foodborne pathogens like Staphylococcus aureus, Salmonella typhi, and Listeria monocytogenes in milk products. However, Multiplex PCR proved unreliable for rapid diagnosis of these contaminants.
Area of Science:
- Food safety and microbiology
- Molecular diagnostics
- Public health
Background:
- Foodborne diseases from milk and dairy products pose a global health challenge.
- Increasing antibiotic resistance in bacteria like Listeria monocytogenes, Staphylococcus aureus, and Salmonella typhi complicates infection control.
- Antibiotic residues in animal products are a growing concern.
Purpose of the Study:
- To assess contamination levels of raw milk, pasteurized milk, and local cheese with specific foodborne pathogens.
- To develop and evaluate a rapid Multiplex PCR method for detecting these contaminants.
- To determine the antibiotic resistance patterns of isolated bacteria.
Main Methods:
- Collected 100 samples from livestock and retail outlets.
- Utilized culture and molecular methods (real-time qPCR, Multiplex PCR) for bacterial identification.
- Determined antibiotic resistance profiles of identified isolates.
Main Results:
- Culture methods detected Staphylococcus aureus in 10% of samples; Salmonella typhi and Listeria monocytogenes were undetected.
- Real-time qPCR identified Staphylococcus aureus in 60%, Salmonella typhi in 53%, and Listeria monocytogenes in 2% of samples.
- Multiplex PCR showed 72% specificity and 80% sensitivity, deemed unreliable for rapid diagnosis.
Conclusions:
- Real-time qPCR is a highly sensitive method for detecting Staphylococcus typhi, Listeria monocytogenes, and Staphylococcus aureus in milk products compared to traditional culture.
- The Multiplex PCR method demonstrated insufficient reliability for rapid and accurate diagnosis of these foodborne pathogens.
- Further research into sensitive and reliable molecular diagnostic tools is crucial for ensuring milk and dairy product safety.
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