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Updated: Oct 23, 2025

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation
Published on: June 3, 2020
Plant-bacteria associations are phylogenetically structured in the phyllosphere
Geneviève Lajoie1, Steven W Kembel1
1Département des Sciences Biologiques, Université du Québec à Montréal, 141 Avenue du Président-Kennedy, Montréal, QC, H2X 1Y4, Canada.
Host and microbial evolutionary histories shape their associations. Phylogenetically similar trees and bacteria tend to associate, influencing future ecological interactions and fitness consequences.
Area of Science:
- Ecology and Evolution
- Microbial Ecology
- Phylogenetics
Background:
- Global change may create novel host-microbe interactions, impacting ecological and evolutionary dynamics.
- Understanding host and microbial evolutionary histories is crucial for predicting fitness consequences of these new associations.
Purpose of the Study:
- Investigate how host and bacterial phylogenetic relatedness influences bacterial distribution on tree leaf surfaces (phyllosphere).
- Evaluate the role of functional traits in explaining these host-microbe associations across diverse tree species.
Main Methods:
- Utilized shotgun metagenomic and amplicon sequencing to analyze bacterial communities.
- Examined phylogenetic relatedness among host trees and their associated bacteria.
- Assessed functional gene variations in bacteria across different host types (gymnosperm and angiosperm).
Main Results:
- Phylogenetically similar hosts harbored similar bacterial communities, and vice versa.
- Host-bacterial phylogenetic interactions explained significant variation in their associations.
- Early ecological variations in plant and bacterial phylogenies were key drivers of current associations.
- Bacterial genes related to amino acid biosynthesis and motility were important for community turnover between gymnosperm and angiosperm hosts.
Conclusions:
- Host and microbial evolutionary histories significantly influence contemporary associations.
- Phylogenetic relatedness and functional traits play critical roles in structuring phyllosphere microbial communities.
- Early evolutionary events have lasting impacts on host-microbe interactions in the face of global change.
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