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Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA
Published on: July 9, 2021
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Computational Analysis of lncRNA from cDNA Sequences
Susan Boerner1, Karen M McGinnis2
1Department of Biological Science, Florida State University, Tallahassee, FL, USA.
Methods in Molecular Biology (Clifton, N.J.)
|August 21, 2021
Abstract:
Based on recent findings, long noncoding (lnc) RNAs represent a potential class of functional molecules within the cell. In this chapter we describe a computational scheme to identify and classify lncRNAs within maize from full-length cDNA sequences to designate subsets of lncRNAs for which biogenesis and regulatory mechanisms may be verified at the bench. We make use of the Coding Potential Calculator and specific Python scripts in our approach.
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