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A modified nudged elastic band algorithm with adaptive spring lengths.

D Mandelli1, M Parrinello1

  • 1Atomistic Simulations, Italian Institute of Technology, Via Morego, 30 16163 Genova, Italy.

The Journal of Chemical Physics
|August 22, 2021
PubMed
Summary
This summary is machine-generated.

We introduce a modified nudged elastic band (NEB) algorithm that uses the Onsager-Machlup action for adaptive resolution, improving minimum energy path calculations without extra parameters or computational cost.

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Area of Science:

  • Computational chemistry
  • Materials science
  • Chemical physics

Background:

  • The nudged elastic band (NEB) algorithm is widely used to find minimum energy paths (MEPs) between chemical configurations.
  • Standard NEB methods often require manual adjustment of parameters to achieve sufficient resolution around critical points.

Purpose of the Study:

  • To develop a modified NEB algorithm that automatically adapts the resolution of the MEP.
  • To improve the efficiency and accuracy of MEP calculations by enhancing resolution near saddle points.

Main Methods:

  • A modified nudged elastic band (NEB) algorithm was developed.
  • The harmonic band-energy term was replaced with a discretized Onsager-Machlup action.
  • This modification results in adaptive spring lengths that automatically increase resolution around saddle points.

Main Results:

  • The modified NEB algorithm achieves adaptive spring lengths, increasing resolution around saddle points.
  • The method maintains the same computational cost per optimization step as the standard NEB algorithm.
  • Applications demonstrated accurate MEP calculations for alanine dipeptide isomerization, ethane dehydrogenation, and graphene defect healing.

Conclusions:

  • The proposed NEB modification offers an efficient and parameter-free approach to accurately determine minimum energy paths.
  • This adaptive method enhances the resolution of MEPs around saddle points, crucial for understanding reaction mechanisms and material properties.