Long Non-coding RNA RP11-395G23.3 Acts as a Competing Endogenous RNA of miR-124-3p to Regulate ROR1 in Anaplastic

An-Cheng Qin1,2, Yi Qian2, Yu-Yuan Ma2

  • 1The Third Affiliated Hospital of Soochow University, Changzhou, China.

Frontiers in Genetics
|August 23, 2021
PubMed

Insights

Anaplastic thyroid carcinoma (ATC) research reveals RP11-395G23.3 promotes tumor growth by regulating miR-124-3p and ROR1. Silencing this long non-coding RNA inhibits ATC cell proliferation and induces apoptosis, suggesting a new diagnostic target.

Area of Science:

  • Molecular Oncology
  • Genomics
  • Biomarker Discovery

Background:

  • Anaplastic thyroid carcinoma (ATC) is an aggressive malignancy with poorly understood mechanisms.
  • Competitive endogenous RNA (ceRNA) networks are emerging as crucial for identifying ATC biomarkers.

Purpose of the Study:

  • To elucidate the molecular mechanisms of ATC and identify potential diagnostic biomarkers.
  • To construct and analyze an lncRNA/miRNA/mRNA regulatory network in ATC.

Main Methods:

  • Differential gene expression analysis (mRNAs and lncRNAs).
  • Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses.
  • Construction of an lncRNA/miRNA/mRNA network.
  • Quantitative reverse transcription polymerase chain reaction (qRT-PCR) validation.
  • Loss-of-function assays and mechanistic studies involving RP11-395G23.3, miR-124-3p, and ROR1.

Main Results:

  • Identified 705 differentially expressed mRNAs and 47 differentially expressed lncRNAs.
  • Constructed a network with 1103 regulatory relations.
  • Confirmed RP11-395G23.3 upregulation in ATC; silencing inhibited proliferation and induced apoptosis.
  • Established that RP11-395G23.3 acts as a ceRNA for miR-124-3p, upregulating ROR1.

Conclusions:

  • The RP11-395G23.3/miR-124-3p/ROR1 axis is implicated in ATC pathogenesis.
  • This axis represents a potential therapeutic target and diagnostic biomarker for anaplastic thyroid carcinoma.

Related Concept Videos

lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
9.1K
MicroRNAs01:22

MicroRNAs

MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
3.3K
Experimental RNAi02:15

Experimental RNAi

RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
6.5K
RNA Interference01:23

RNA Interference

RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
26.8K
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.8K
piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
7.1K