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Updated: Oct 23, 2025

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
Published on: April 5, 2018
Epigenetic instability may alter cell state transitions and anticancer drug resistance
1Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United States of America.
Abstract:
Drug resistance is a significant obstacle to successful and durable anti-cancer therapy. Targeted therapy is often effective during early phases of treatment; however, eventually cancer cells adapt and transition to drug-resistant cells states rendering the treatment ineffective. It is proposed that cell state can be a determinant of drug efficacy and manipulated to affect the development of anticancer drug resistance. In this work, we developed two stochastic cell state models and an integrated stochastic-deterministic model referenced to brain tumors. The stochastic cell state models included transcriptionally-permissive and -restrictive states based on the underlying hypothesis that epigenetic instability mitigates lock-in of drug-resistant states. When moderate epigenetic instability was implemented the drug-resistant cell populations were reduced, on average, by 60%, whereas a high level of epigenetic disruption reduced them by about 90%. The stochastic-deterministic model utilized the stochastic cell state model to drive the dynamics of the DNA repair enzyme, methylguanine-methyltransferase (MGMT), that repairs temozolomide (TMZ)-induced O6-methylguanine (O6mG) adducts. In the presence of epigenetic instability, the production of MGMT decreased that coincided with an increase of O6mG adducts following a multiple-dose regimen of TMZ. Generation of epigenetic instability via epigenetic modifier therapy could be a viable strategy to mitigate anticancer drug resistance.
Insights
Epigenetic instability can reduce drug-resistant cancer cell populations by up to 90%. This approach may offer a new strategy to overcome resistance to anti-cancer therapies like temozolomide.
Area of Science:
- Oncology
- Epigenetics
- Computational Biology
Background:
- Drug resistance is a major challenge in anti-cancer therapy, leading to treatment failure.
- Cancer cells can adapt to targeted therapies, developing drug-resistant states.
- Cellular state plasticity is a potential target for overcoming drug resistance.
Purpose of the Study:
- To investigate the role of cell state and epigenetic instability in the development of anticancer drug resistance.
- To develop computational models simulating cell state dynamics and drug resistance.
- To evaluate the potential of epigenetic modifications to mitigate drug resistance.
Main Methods:
- Developed two stochastic cell state models and an integrated stochastic-deterministic model.
- Modeled transcriptionally-permissive and -restrictive cell states.
- Simulated the impact of varying levels of epigenetic instability on drug-resistant populations and MGMT dynamics.
Main Results:
- Moderate epigenetic instability reduced drug-resistant populations by ~60%; high instability reduced them by ~90%.
- Epigenetic instability decreased MGMT production, increasing O6mG adducts after temozolomide (TMZ) treatment.
- A decrease in MGMT correlated with increased O6mG adducts under a multi-dose TMZ regimen.
Conclusions:
- Epigenetic instability can significantly reduce drug-resistant cancer cell populations.
- Targeting epigenetic instability may be a viable strategy to overcome resistance to therapies like TMZ.
- Epigenetic modifier therapy could be a promising approach to enhance anti-cancer drug efficacy.
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