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SARS-CoV-2 N gene mutations impact detection by clinical molecular diagnostics: reports in two cities in the United
Mindy Leelawong1, Stephanie L Mitchell2, Randal C Fowler1
1New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, NY, USA.
Diagnostic Microbiology and Infectious Disease
|August 23, 2021
Abstract:
Nasal and nasopharyngeal swab specimens tested by the Cepheid Xpert Xpress SARS-CoV-2 were analyzed by whole-genome sequencing based on impaired detection of the N2 target. Each viral genome had at least one mutation in the N gene, which likely arose independently in the New York City and Pittsburgh study sites.

