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Updated: Oct 23, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
The gut microbiome in sickle cell disease: Characterization and potential implications
Hassan Brim1, James Taylor1, Muneer Abbas1
1Department of Pathology, Department of Medicine, Cancer Center, Microbiology and Center for Sickle Cell Disease, Howard University College of Medicine, Washington, DC, United States of America.
Sickle Cell Disease (SCD) patients exhibit significant gut microbiome dysbiosis, with altered bacterial composition linked to inflammation. This dysbiosis was also observed in a Townes mouse model, suggesting its utility for further research.
Area of Science:
- Microbiome research
- Gastroenterology
- Hematology
Background:
- Sickle Cell Disease (SCD) is an inherited blood disorder causing anemia, pain, and organ damage.
- Recurrent gut hypoxia-reperfusion injury in SCD may increase permeability and bacterial translocation.
- The gut microbiome plays a crucial role in health and disease, potentially impacting SCD.
Purpose of the Study:
- To characterize the gut microbiome composition in individuals with Sickle Cell Disease.
- To investigate potential alterations in bacterial communities associated with SCD.
- To compare gut microbiome profiles between SCD patients and healthy controls.
Main Methods:
- Collected stool and saliva samples from 14 healthy controls and 14 SCD subjects.
- Utilized Next Generation Sequencing (NGS) of amplified 16S rDNA for bacterial analysis.
- Analyzed bacterial composition and differentials in human and murine samples using DeSeq software.
Main Results:
- Observed significant gut microbiome dysbiosis in SCD patients compared to controls.
- Identified a lower Firmicutes/Bacteroidetes ratio in SCD patients.
- Found increased abundance of specific bacterial families (e.g., Acetobacteraceae, Bifidobacteriaceae) and 420 distinct OTUs in SCD patients.
Conclusions:
- SCD is associated with gut dysbiosis involving pro-inflammatory bacterial triggers.
- The Townes SCD mouse model mirrors human gut dysbiosis, serving as a valuable research tool.
- Further research can explore gut microbiome modulation's impact on SCD pathophysiology.
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