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Cephalopod species identification using integrated analysis of machine learning and deep learning approaches
Hui Yuan Tan1, Zhi Yun Goh1, Kar-Hoe Loh2
1Bioinformatics Programme, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, Malaysia.
Peerj
|August 26, 2021
Summary
This study developed an automated cephalopod identification model using beak images. The Artificial Neural Network model achieved 91.14% accuracy, highlighting the effectiveness of deep learning for cephalopod species classification.
Area of Science:
- Marine biology
- Computational biology
- Taxonomy
Background:
- Limited taxonomic research on Malaysian cephalopods despite their ecological and commercial importance.
- Cephalopod beaks offer a reliable alternative for species identification due to their durable nature.
- Traditional identification methods are time-consuming.
Purpose of the Study:
- To develop an automated model for identifying cephalopod species using beak images.
- To compare the effectiveness of traditional morphometric features versus deep features for classification.
- To evaluate different machine learning models for cephalopod identification.
Main Methods:
- Collected 174 samples of seven cephalopod species from Peninsular Malaysia.
- Extracted and imaged upper and lower beaks.
- Extracted traditional features (HOG, MSD) and deep features (VGG19, InceptionV3, Resnet50).
- Applied eight machine learning approaches for classification.
Main Results:
- The Artificial Neural Network (ANN) model achieved the highest accuracy (91.14%) using deep features from lower beak images with the VGG19 model.
- Deep features outperformed traditional features in distinguishing species.
- Lower beak images provided more accurate identification than upper beak images.
Conclusions:
- Automated identification using deep features from cephalopod beaks is highly effective.
- Lower beak morphology offers more distinct species-specific characteristics.
- Future research should expand species and sample size for improved model accuracy.

