NMR chemical shift assignments of RNA oligonucleotides to expand the RNA chemical shift database
Related Experiment Video
Updated: Oct 22, 2025

Practical Aspects of Sample Preparation and Setup of 1H R1ρ Relaxation Dispersion Experiments of RNA
Published on: July 9, 2021
Yaping Liu1, Anita Kotar1,2, Tracy L Hodges1
1Biophysics Program, University of Michigan, 930 N. University Avenue, Ann Arbor, MI, 48109, USA.
Abstract:
RNAs play myriad functional and regulatory roles in the cell. Despite their significance, three-dimensional structure elucidation of RNA molecules lags significantly behind that of proteins. NMR-based studies are often rate-limited by the assignment of chemical shifts. Automation of the chemical shift assignment process can greatly facilitate structural studies, however, accurate chemical shift predictions rely on a robust and complete chemical shift database for training. We searched the Biological Magnetic Resonance Data Bank (BMRB) to identify sequences that had no (or limited) chemical shift information. Here, we report the chemical shift assignments for 12 RNA hairpins designed specifically to help populate the BMRB.
More Related Videos
Related Concept Videos
NMR Spectroscopy: Chemical Shift Overview
For instance, the proton...
Other Nuclides: 31P, 19F, 15N NMR
While fluorine-19 and phosphorous-31 have high natural abundances (100%) and positive gyromagnetic ratios, nitrogen-15 has a low natural abundance and a negative gyromagnetic ratio. However, nitrogen-15 is still preferred over nitrogen-14 (which has a...
Proton (¹H) NMR: Chemical Shift
Absorption signals of all the protium nuclei...
¹H NMR Chemical Shift Equivalence: Homotopic and Heterotopic Protons
¹H NMR Chemical Shift Equivalence: Enantiotopic and Diastereotopic Protons
In chiral compounds such as 2-butanol, replacing the methylene hydrogens at C3 produces a pair of...
NMR Spectroscopy Of Amines

