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Published on: November 22, 2021
Systematic analysis of the potential off-target activities of osimertinib by computational target fishing
Shao-Jun Chen1, Yan-Hua Bi2, Li-Hua Zhang3
1Department of Traditional Chinese Medicine, Zhejiang Pharmaceutical College, Ningbo.
Abstract:
Osimertinib is a third-generation epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor used to treat non-small cell lung cancer. However, its off-targets are obscure, and systematic analysis of off-target activities remains to be performed. Here, we identified the off-targets of osimertinib using PharmMapper and DRAR-CPI and analyzed the intersected targets using the GeneMANIA and DAVID servers. A drug-target-pathway network was constructed to visualize the associations. The results showed that osimertinib is associated with 31 off-targets, 40 Kyoto Encyclopedia of Genes and Genomes pathways, and 9 diseases. Network analysis revealed that the targets were involved in cancer and other physiological processes. In addition to EGFR, molecular docking analysis showed that seven proteins, namely Janus kinase 3, peroxisome proliferator-activated receptor alpha, renin, mitogen-activated protein kinases, lymphocyte-specific protein tyrosine kinase, cell division protein kinase 2 and proto-oncogene tyrosine-protein kinase Src, could also be potential targets of osimertinib. In conclusion, osimertinib is predicted to target multiple proteins and pathways, resulting in the formation of an action network via which it exerts systematic pharmacological effects.
Insights
Osimertinib, an EGFR inhibitor for lung cancer, has 31 identified off-targets. These targets are linked to various pathways and diseases, revealing its broader pharmacological effects beyond EGFR.
Area of Science:
- Pharmacology
- Oncology
- Bioinformatics
Background:
- Osimertinib is a third-generation epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor used for non-small cell lung cancer.
- The off-target activities of osimertinib are not fully understood, necessitating systematic analysis.
Purpose of the Study:
- To identify and analyze the off-targets of osimertinib.
- To construct a drug-target-pathway network for osimertinib.
Main Methods:
- Utilized PharmMapper and DRAR-CPI for off-target identification.
- Employed GeneMANIA and DAVID servers for target analysis.
- Constructed a drug-target-pathway network and performed molecular docking.
Main Results:
- Identified 31 osimertinib off-targets associated with 40 Kyoto Encyclopedia of Genes and Genomes pathways and 9 diseases.
- Network analysis indicated involvement in cancer and other physiological processes.
- Seven potential novel targets identified, including Janus kinase 3 and Src kinase, besides EGFR.
Conclusions:
- Osimertinib targets multiple proteins and pathways, exerting systematic pharmacological effects through an action network.
- Understanding these off-target interactions is crucial for comprehensive drug profiling and therapeutic strategy.
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