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Weakly supervised underwater fish segmentation using affinity LCFCN
Issam H Laradji1,2, Alzayat Saleh3, Pau Rodriguez4
1Element AI, Montreal, Canada. issam.laradji@gmail.com.
Scientific Reports
|August 31, 2021
Summary
We developed Affinity-LCFCN (A-LCFCN), a novel fish segmentation model. It uses point-level supervision for faster, efficient training, significantly reducing annotation time for fish body measurements.
Area of Science:
- Computer Vision
- Marine Biology
- Aquaculture Technology
Background:
- Accurate fish body measurements are crucial for marine and aquaculture productivity.
- Current manual and fully-supervised methods for fish measurement are time-consuming and labor-intensive.
- Per-pixel segmentation labels require up to 2 minutes per fish, hindering scalability.
Purpose of the Study:
- To develop an efficient fish segmentation model using point-level supervision.
- To reduce the time and effort required for annotating fish images for measurement.
- To improve the accuracy and efficiency of automated fish body measurement estimation.
Main Methods:
- Proposed Affinity-LCFCN (A-LCFCN), a fully convolutional neural network model.
- Employed point-level supervision, requiring only a single click per fish (average 1 second annotation time).
- Integrated per-pixel scores and affinity matrix outputs, refined using a random walk and trained with localization-based counting fully convolutional neural network (LCFCN) loss.
Main Results:
- A-LCFCN demonstrated superior performance compared to fully-supervised models under fixed annotation budgets.
- The model achieved better segmentation results than the standard LCFCN and other baseline methods.
- Point-level supervision significantly reduced annotation time, making fish measurement more efficient.
Conclusions:
- Affinity-LCFCN offers an efficient and effective solution for fish segmentation using minimal annotation effort.
- The proposed method holds significant potential for enhancing productivity in marine and aquaculture applications.
- Point-level supervision is a viable and advantageous alternative to traditional per-pixel labeling for fish measurement tasks.

