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Updated: Oct 21, 2025

Quantification and Whole Genome Characterization of SARS-CoV-2 RNA in Wastewater and Air Samples
Published on: June 30, 2023
City-level SARS-CoV-2 sewage surveillance
Karin Yaniv1, Marilou Shagan1, Yair E Lewis2
1Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Ben-Gurion University of the Negev, PO Box 653, BeerSheva 8410501, Israel.
Wastewater monitoring effectively tracks SARS-CoV-2 (the virus that causes COVID-19) RNA. This method provides an early warning system for population-level disease activity before clinical outbreaks are apparent.
Area of Science:
- Environmental Science
- Epidemiology
- Public Health
Background:
- The COVID-19 pandemic necessitates innovative disease surveillance methods.
- SARS-CoV-2 RNA is detectable in wastewater, suggesting its potential for monitoring.
- Wastewater surveillance offers an efficient tool for epidemiological tracking and early warning.
Purpose of the Study:
- To assess the feasibility of wastewater monitoring for SARS-CoV-2 surveillance.
- To develop a method for quantifying viral RNA in urban wastewater.
- To evaluate wastewater monitoring as an early warning system for COVID-19 outbreaks.
Main Methods:
- Sampling of urban wastewater infrastructure in Ashkelon, Israel.
- Detection and quantification of SARS-CoV-2 RNA in wastewater samples.
- Development of a Normalized Viral Load (NVL) index to assess virus activity.
Main Results:
- SARS-CoV-2 RNA was detected in wastewater samples from multiple locations.
- The Normalized Viral Load (NVL) index showed varying levels of virus activity.
- An increase in viral load preceded a clinically apparent rise in COVID-19 morbidity by 2-4 weeks.
Conclusions:
- Wastewater monitoring is a viable tool for epidemiological surveillance of SARS-CoV-2.
- The NVL index can indicate population-level virus activity and predict future outbreaks.
- This methodology offers a proactive approach to managing public health during pandemics.
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