Related Experiment Video
Updated: Oct 21, 2025

Therapeutic Evaluation of Fecal Microbiota Transplantation in an Interleukin 10-Deficient Mouse Model
Published on: April 6, 2022
Systematic review with meta-analysis: encapsulated faecal microbiota transplantation - evidence for clinical efficacy
Frederik Cold1, Simon Mark Dahl Baunwall2, Jens Frederik Dahlerup2
1Department of Plant and Environmental Sciences, Copenhagen University, 1871 Frederiksberg, Denmark.
Background:
Faecal microbiota transplantation (FMT) is an effective treatment of recurrent Clostridioides difficile infection (rCDI) and is being applied experimentally in other diseases. Encapsulated administration may be equivalent in efficacy to delivery through other routes.
Methods:
A systematic review was undertaken of studies using encapsulated FMT up to 26 October 2020. Data on indication, clinical outcomes, safety, treatment protocol and capsule preparation were collected and reported. Pooled rates of clinical efficacy in rCDI were calculated using random-effects meta-analysis. The impact of single variables on clinical efficacy was evaluated using univariate meta-regression.
Results:
A total of 35 studies reporting the treatment of 960 patients with encapsulated FMT for eight different indications met the inclusion criteria. Most studies (n = 18, 51%) and patients (n = 755, 79%) were from studies on rCDI. Cure rates after single and multiple courses of treatments with encapsulated FMT in rCDI were 85% (95% CI: 82%-88%) and 93% (95% CI: 88%-96%) respectively. The treatment outcome was not significantly affected by dose, number of delivered capsules, anaerobic/aerobic processing, single/multi-donor treatment, lyophilisation, or any other single factor in the production or delivery of encapsulated FMT. Promising but non-comparable results from the treatment of ulcerative colitis and multidrug-resistant organisms were reported.
Conclusions:
Encapsulated FMT is an effective and safe treatment of rCDI, with cure rates comparable to FMT delivered through other routes. The treatment is effective despite variations in donor screening, preparation and treatment protocol. For other indications, the role of FMT capsules is still not sufficiently examined, although some studies show promising results.
Plain Language Summary:
Transfer of faecal material through capsules in the treatment of various diseases. Evidence for clinical efficacy The bacteria and other microorganisms of the gut is different in patient with various diseases in comparison with healthy subjects.Therefore, ways to change the microorganisms of the gut in a beneficial direction has been the subject of various research projects within recent years.Faecal microbiota transplantation often referred as FMT is a method of transferring microorganisms from healthy donors to patients with various diseases and is seen as one way to change the microbial community of the gut in a beneficial direction.Faecal microbiota transplantation can be performed in different ways such as through endoscopy, enemas or capsules. The transfer through capsules is preferred by the patients and has advantages since it can be administered long-term and can be delivered to the patients in their home. In this paper, we evaluated all accessible research reporting treatment with encapsulated faecal microbiota transplantation in the treatment of various diseases. We report the following major findings:-Treatment with capsules is safe when guidelines for screening donors and testing faecal material is followed.-The treatment is highly effective in the treatment of recurrent C. difficile infection, a disease with high mortality often caused by repeated antibiotic treatments. The treatment was effective in 596 of 723 patients following one course of capsule treatment.-Faecal microbiota transplantation delivered through capsules is as effective as treatment delivered through other routes in the treatment of C. difficile infection.-The treatment is effective in the treatment of C. difficile infection across studies and countries, despite great differences in the ways the capsules were prepared and delivered.-Increasing the amount of faecal material used in the production did not affect the efficacy of the treatment.-There are promising results in the treatment of other diseases such as liver disease, inflammatory bowel disease and the treatment of multi-drug resistant bacteria.
Insights
Encapsulated faecal microbiota transplantation (FMT) is a safe and effective treatment for recurrent Clostridioides difficile infection (rCDI), showing cure rates comparable to other FMT delivery methods. This approach holds promise for other conditions, though further research is needed.
Area of Science:
- Microbiology and Gastroenterology
- Fecal Microbiota Transplantation (FMT) research
- Clinical Efficacy of Microbial Therapies
Background:
- Faecal microbiota transplantation (FMT) is an established therapy for recurrent Clostridioides difficile infection (rCDI).
- Encapsulated FMT is being explored as an alternative administration route with potential for equivalent efficacy.
- Gut microbiome alterations are implicated in various diseases, driving research into therapeutic microbial transfer.
Purpose of the Study:
- To systematically review the clinical efficacy and safety of encapsulated FMT across various diseases.
- To evaluate the effectiveness of encapsulated FMT specifically for recurrent Clostridioides difficile infection (rCDI).
- To assess factors influencing the efficacy of encapsulated FMT and explore its potential in non-rCDI conditions.
Main Methods:
- Systematic review of 35 studies involving encapsulated FMT up to October 2020.
- Data collection on indications, outcomes, safety, and preparation protocols.
- Random-effects meta-analysis for pooled efficacy rates in rCDI and univariate meta-regression for variable impact.
Main Results:
- Encapsulated FMT was used for eight indications, with the majority of studies (51%) and patients (79%) focused on rCDI.
- rCDI cure rates were 85% after a single course and 93% after multiple courses.
- Efficacy was not significantly impacted by dose, processing methods, donor type, or lyophilisation; promising results noted for ulcerative colitis and multidrug-resistant organisms.
Conclusions:
- Encapsulated FMT is a safe and effective treatment for rCDI, achieving cure rates comparable to other delivery methods.
- Treatment effectiveness for rCDI is consistent despite variations in donor screening, preparation, and protocols.
- The utility of encapsulated FMT for other diseases requires further investigation, though initial findings are promising.

