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Updated: Oct 21, 2025

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
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Scale-Free Spanning Trees and Their Application in Genomic Epidemiology

Yury Orlovich1, Kirill Kukharenko2, Volker Kaibel2

  • 1Faculty of Applied Mathematics and Computer Science, Belarusian State University, Minsk, Belarus.

Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
|September 7, 2021
PubMed
Summary

This study introduces algorithms for finding scale-free-like spanning trees, crucial for reconstructing viral transmission networks in genomic epidemiology. The methods accurately reconstruct hepatitis C transmission histories.

Keywords:
computational complexitygenomic epidemiologyinteger linear programmingscale-free networktransmission network

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