Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation
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Updated: Oct 21, 2025

A High-content In Vitro Pancreatic Islet β-cell Replication Discovery Platform
Published on: July 16, 2016
Shane P Simonett1, Sunyoung Shin2, Jacob A Herring3
1Biochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Abstract:
The transcription factor NFATC2 induces β cell proliferation in mouse and human islets. However, the genomic targets that mediate these effects have not been identified. We expressed active forms of Nfatc2 and Nfatc1 in human islets. By integrating changes in gene expression with genomic binding sites for NFATC2, we identified approximately 2200 transcriptional targets of NFATC2. Genes induced by NFATC2 were enriched for transcripts that regulate the cell cycle and for DNA motifs associated with the transcription factor FOXP. Islets from an endocrine-specific Foxp1, Foxp2, and Foxp4 triple-knockout mouse were less responsive to NFATC2-induced β cell proliferation, suggesting the FOXP family works to regulate β cell proliferation in concert with NFATC2. NFATC2 induced β cell proliferation in both mouse and human islets, whereas NFATC1 did so only in human islets. Exploiting this species difference, we identified approximately 250 direct transcriptional targets of NFAT in human islets. This gene set enriches for cell cycle-associated transcripts and includes Nr4a1. Deletion of Nr4a1 reduced the capacity of NFATC2 to induce β cell proliferation, suggesting that much of the effect of NFATC2 occurs through its induction of Nr4a1. Integration of noncoding RNA expression, chromatin accessibility, and NFATC2 binding sites enabled us to identify NFATC2-dependent enhancer loci that mediate β cell proliferation.
Insights
The transcription factor NFATC2 promotes beta cell proliferation by regulating cell cycle genes. The FOXP family and Nr4a1 are key mediators of this NFATC2-driven proliferation in human and mouse islets.
Area of Science:
- Endocrinology
- Molecular Biology
- Genetics
Background:
- The transcription factor NFATC2 (Nuclear Factor of Activated T-cells 2) is known to induce beta cell proliferation.
- Genomic targets mediating NFATC2's role in beta cell proliferation remain largely unidentified.
Purpose of the Study:
- To identify NFATC2's genomic targets and understand their role in beta cell proliferation.
- To investigate the involvement of the FOXP family and Nr4a1 in NFATC2-mediated beta cell proliferation.
Main Methods:
- Integration of gene expression data with NFATC2 genomic binding sites in human islets.
- Analysis of endocrine-specific Foxp1, Foxp2, and Foxp4 triple-knockout mouse models.
- Deletion studies of Nr4a1 to assess its role in NFATC2-induced proliferation.
- Integration of noncoding RNA expression, chromatin accessibility, and NFATC2 binding sites.
Main Results:
- Approximately 2200 NFATC2 transcriptional targets were identified, enriched for cell cycle regulators.
- FOXP family transcription factors cooperate with NFATC2 to regulate beta cell proliferation.
- NFATC2 induced beta cell proliferation in both mouse and human islets, while NFATC1 showed this effect only in human islets.
- Approximately 250 direct NFAT targets in human islets were identified, including Nr4a1.
- Deletion of Nr4a1 significantly reduced NFATC2-induced beta cell proliferation.
- NFATC2-dependent enhancer loci mediating beta cell proliferation were identified.
Conclusions:
- NFATC2 drives beta cell proliferation through regulation of cell cycle genes and direct induction of Nr4a1.
- The FOXP family of transcription factors plays a collaborative role with NFATC2 in regulating beta cell proliferation.
- NFATC2-dependent enhancers are critical regulatory elements for beta cell proliferation.
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