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Updated: Oct 21, 2025

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
p53 is functionally inhibited in clear cell renal cell carcinoma (ccRCC): a mechanistic and correlative investigation
Karoline Diesing1, Silvia Ribback2, Stefan Winter3,4
1Department of Urology, University Medicine Greifswald, Ferdinand-Sauerbruch-Straße, E17475, Greifswald, Germany.
Purpose:
Although p53 is rarely mutated in ccRCC, its overexpression has been linked to poor prognosis. The current study sought to elucidate the unique role of p53 in ccRCC with genomic, proteomic, and functional analyses.
Materials And Methods:
Data from the Cancer Genome Atlas (TCGA) were evaluated for genomic and proteomic characteristics of p53; a tissue micro array (TMA) study was carried out to evaluate the association of p53 and phosphorylated p53 (pp53) with clinical outcome. Mechanistic in vitro experiments were performed to confirm a pro-apoptotic loss of p53 in ccRCC and p53 isoforms as well as posttranslational modifications of p53 where assessed to provide possible reasons for a functional inhibition of p53 in ccRCC.
Results:
A low somatic mutation rate of p53 could be confirmed. Although mRNA levels were correlated with poor prognosis and clinicopathological features, there was no monotonous association of mRNA levels with survival outcome. Higher p53 protein levels could be confirmed as poor prognostic features. In vitro, irradiation of ccRCC cell lines markedly induced levels of p53 and of activated (phosphorylated) p53. However, irradiated ccRCC cells demonstrated similar proliferation, migration, and p53 transcriptional activity like non-irradiated controls indicating a functional inhibition of p53. p53 isoforms and could not be correlated with clinical outcome of ccRCC patients.
Conclusions:
p53 is rarely mutated but the wildtype p53 is functionally inhibited in ccRCC. To investigate mechanisms that underlie functional inhibition of p53 may provide attractive therapeutic targets in ccRCC.
Insights
Wildtype p53 is functionally inhibited in clear cell renal cell carcinoma (ccRCC), despite rare mutations. Investigating mechanisms of this inhibition may reveal new therapeutic targets for ccRCC patients.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Clear cell renal cell carcinoma (ccRCC) rarely exhibits p53 mutations.
- Overexpression of p53 in ccRCC has been associated with poorer patient prognosis.
Purpose of the Study:
- To investigate the distinct role of p53 in ccRCC using comprehensive genomic, proteomic, and functional analyses.
- To elucidate the mechanisms behind p53's functional inhibition in ccRCC.
Main Methods:
- Analysis of The Cancer Genome Atlas (TCGA) data for p53 genomic and proteomic profiles.
- Tissue microarray (TMA) study to correlate p53 and phosphorylated p53 (pp53) with clinical outcomes.
- In vitro experiments to assess p53 function, isoforms, and post-translational modifications in ccRCC cell lines.
Main Results:
- Confirmed low somatic mutation rates for p53 in ccRCC.
- Elevated p53 protein levels correlated with poor prognosis, while mRNA levels showed complex associations with survival.
- In vitro studies indicated functional inhibition of p53 in ccRCC cells, as evidenced by sustained proliferation and transcriptional activity post-irradiation despite induced p53 and pp53 levels.
Conclusions:
- Wildtype p53 is functionally inhibited in ccRCC, despite its low mutation rate.
- Understanding the mechanisms of p53 functional inhibition presents potential therapeutic strategies for ccRCC.
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