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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Characterization of KRAS Mutation Subtypes in Non-small Cell Lung Cancer
Julia Judd1, Nagla Abdel Karim2, Hina Khan3
1Department of Hematology-Oncology, Fox Chase Cancer Center, Temple University Health System, Philadelphia, Pennsylvania.
Abstract:
KRAS is the most commonly mutated oncogene in NSCLC and development of direct KRAS inhibitors has renewed interest in this molecular variant. Different KRAS mutations may represent a unique biologic context with different prognostic and therapeutic impact. We sought to characterize genomic landscapes of advanced, KRAS-mutated non-small cell lung cancer (NSCLC) in a large national cohort to help guide future therapeutic development.Molecular profiles of 17,095 NSCLC specimens were obtained using DNA next-generation sequencing of 592 genes (Caris Life Sciences) and classified on the basis of presence and subtype of KRAS mutations. Co-occurring genomic alterations, tumor mutational burden (TMB), and PD-L1 expression [22C3, tumor proportion score (TPS) score] were analyzed by KRAS mutation type.Across the cohort, 4,706 (27.5%) samples harbored a KRAS mutation. The most common subtype was G12C (40%), followed by G12V (19%) and G12D (15%). The prevalence of KRAS mutations was 37.2% among adenocarcinomas and 4.4% in squamous cell carcinomas. Rates of high TMB (≥10 mutations/Mb) and PD-L1 expression varied across KRAS mutation subtypes. KRAS G12C was the most likely to be PD-L1 positive (65.5% TPS ≥ 1%) and PD-L1 high (41.3% TPS ≥ 50%). STK11 was mutated in 8.6% of KRAS wild-type NSCLC but more frequent in KRAS-mutant NSCLC, with the highest rate in G13 (36.2%). TP53 mutations were more frequent in KRAS wild-type NSCLC (73.6%).KRAS mutation subtypes have different co-occurring mutations and a distinct genomic landscape. The clinical relevance of these differences in the context of specific therapeutic interventions warrants investigation.
Insights
KRAS mutations are common in non-small cell lung cancer (NSCLC). Different KRAS subtypes, like G12C, show distinct genomic profiles and PD-L1 expression, impacting treatment strategies.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- KRAS is a frequently mutated oncogene in non-small cell lung cancer (NSCLC).
- Targeted KRAS inhibitors are emerging, increasing interest in understanding KRAS mutation subtypes.
- Different KRAS mutations may influence prognosis and treatment response.
Purpose of the Study:
- To characterize the genomic landscape of advanced KRAS-mutated NSCLC.
- To identify co-occurring alterations, tumor mutational burden (TMB), and PD-L1 expression across KRAS mutation subtypes.
- To guide future therapeutic development for KRAS-mutated NSCLC.
Main Methods:
- DNA next-generation sequencing of 592 genes was performed on 17,095 NSCLC specimens.
- Specimens were classified based on KRAS mutation presence and subtype.
- Analysis included co-occurring genomic alterations, TMB, and PD-L1 expression (22C3, TPS).
Main Results:
- KRAS mutations were found in 27.5% of NSCLC cases, with G12C (40%), G12V (19%), and G12D (15%) being most common.
- KRAS G12C was associated with higher PD-L1 positivity (65.5%) and high PD-L1 expression (41.3%).
- STK11 mutations were more frequent in KRAS-mutant NSCLC, particularly G13 (36.2%), while TP53 mutations were more common in KRAS wild-type NSCLC (73.6%).
Conclusions:
- KRAS mutation subtypes exhibit distinct co-occurring mutations and genomic landscapes.
- These genomic differences may have clinical relevance for specific therapeutic interventions.
- Further investigation is warranted to explore the clinical utility of these findings.
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