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Updated: Oct 20, 2025

An Easy and Flexible Inoculation Method for Accurately Assessing Powdery Mildew-Infection Phenotypes of Arabidopsis and Other Plants
Published on: March 9, 2021
A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana
Paloma Durán1,2, Anja Reinstädler3, Anna Lisa Rajakrut1
1Department of Plant-Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, Cologne, 50829, Germany.
Abstract:
Powdery mildew is a foliar disease caused by epiphytically growing obligate biotrophic ascomycete fungi. How powdery mildew colonization affects host resident microbial communities locally and systemically remains poorly explored. We performed powdery mildew (Golovinomyces orontii) infection experiments with Arabidopsis thaliana grown in either natural soil or a gnotobiotic system and studied the influence of pathogen invasion into standing natural multi-kingdom or synthetic bacterial communities (SynComs). We found that after infection of soil-grown plants, G. orontii outcompeted numerous resident leaf-associated fungi while fungal community structure in roots remained unaltered. We further detected a significant shift in foliar but not root-associated bacterial communities in this setup. Pre-colonization of germ-free A. thaliana leaves with a bacterial leaf-derived SynCom, followed by G. orontii invasion, induced an overall similar shift in the foliar bacterial microbiota and minor changes in the root-associated bacterial assemblage. However, a standing root-derived SynCom in root samples remained robust against foliar infection with G. orontii. Although pathogen growth was unaffected by the leaf SynCom, fungal infection caused a twofold increase in leaf bacterial load. Our findings indicate that G. orontii infection affects mainly microbial communities in local plant tissue, possibly driven by pathogen-induced changes in source-sink relationships and host immune status.
Insights
Powdery mildew infection primarily impacts local plant tissues, altering leaf microbial communities but leaving root microbes largely unaffected. This pathogen-induced shift may stem from changes in nutrient flow and the plant's immune response.
Area of Science:
- Plant pathology
- Microbiome research
- Plant-microbe interactions
Background:
- Powdery mildew is a significant foliar disease caused by ascomycete fungi.
- The impact of powdery mildew on host-associated microbial communities, both locally and systemically, is not well understood.
Purpose of the Study:
- To investigate how powdery mildew (Golovinomyces orontii) colonization affects resident microbial communities in Arabidopsis thaliana.
- To differentiate between local (foliar) and systemic (root) effects on fungal and bacterial communities.
Main Methods:
- Infection experiments using Arabidopsis thaliana in natural soil and gnotobiotic systems.
- Introduction of powdery mildew into plants with pre-established synthetic bacterial communities (SynComs) derived from leaf or root microbes.
- Analysis of fungal and bacterial community structure in both foliar and root tissues post-infection.
Main Results:
- Golovinomyces orontii outcompeted resident leaf fungi, but root fungal communities remained stable.
- Significant shifts were observed in foliar bacterial communities, while root bacterial communities showed minor changes.
- Pre-colonization with leaf-derived SynComs led to similar foliar bacterial shifts, whereas root-derived SynComs were resilient to foliar infection.
- Fungal infection doubled the leaf bacterial load, independent of the leaf SynCom's presence.
Conclusions:
- Powdery mildew infection predominantly influences microbial communities in the local plant tissue (leaves).
- Changes in source-sink relationships and host immune status are potential drivers of these microbial shifts.
- Root microbial communities exhibit resilience to foliar powdery mildew infection.
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