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DNA-Tethered RNA Polymerase for Programmable In vitro Transcription and Molecular Computation
Published on: December 29, 2021
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Completely Chemically Synthesized Long DNA Can be Transcribed in Human Cells.
Kazuki Yamaoka1, Ryota Oikawa1, Naoko Abe1
1Graduate School of Science, Department of Chemistry, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.
Chembiochem : a European Journal of Chemical Biology
|September 14, 2021
Summary
Chemically synthesized long DNA fragments using multiple chemical ligation reactions enable functional gene silencing. This method overcomes unnatural linkage issues, demonstrating successful gene silencing in HeLa cells.
Area of Science:
- Synthetic biology
- Molecular biology
- Chemical synthesis
Background:
- Chemical ligation is a key method for constructing long DNA molecules from smaller synthesized fragments.
- Unnatural linkages formed during DNA ligation can hinder the biological functionality of the synthesized DNA.
Purpose of the Study:
- To achieve complete chemical synthesis of long DNA molecules using multiple chemical ligation reactions.
- To demonstrate the biological function of chemically synthesized DNA, specifically gene silencing.
- To overcome the limitations of unnatural linkages in chemically ligated DNA.
Main Methods:
- Utilized multiple chemical ligation reactions with phosphorothioate and haloacyl-modified DNA fragments.
- Synthesized 78 and 258 base pair (bp) synthetic DNA molecules.
- Constructed a DNA molecule encoding shRNA for luciferase genes with a truncated SV promoter.
Main Results:
- Successfully achieved complete chemical synthesis of 78 and 258 bp DNA molecules.
- The 258 bp synthetic DNA successfully induced gene silencing of luciferase genes in HeLa cells.
- Demonstrated that chemically synthesized DNA can retain biological function despite ligation.
Conclusions:
- Multiple chemical ligation reactions with modified DNA fragments are effective for synthesizing functional long DNA.
- This approach overcomes the biological impairment typically caused by unnatural linkages in ligated DNA.
- Chemically synthesized DNA, including gene-silencing constructs, can be biologically active.
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