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Updated: Oct 20, 2025

Dual CRISPR-Interference Strategy for Targeting Synthetic Lethal Interactions Between Non-Coding RNAs in Cancer Cells
Published on: May 30, 2025
RNA-binding proteins of COSMIC importance in cancer
Abstract:
Herculean efforts by the Wellcome Sanger Institute, the National Cancer Institute, and the National Human Genome Research Institute to sequence thousands of tumors representing all major cancer types have yielded more than 700 genes that contribute to neoplastic growth when mutated, amplified, or deleted. While some of these genes (now included in the COSMIC Cancer Gene Census) encode proteins previously identified in hypothesis-driven experiments (oncogenic transcription factors, protein kinases, etc.), additional classes of cancer drivers have emerged, perhaps none more surprisingly than RNA-binding proteins (RBPs). Over 40 RBPs responsible for virtually all aspects of RNA metabolism, from synthesis to degradation, are recurrently mutated in cancer, and just over a dozen are considered major cancer drivers. This Review investigates whether and how their RNA-binding activities pertain to their oncogenic functions. Focusing on several well-characterized steps in RNA metabolism, we demonstrate that for virtually all cancer-driving RBPs, RNA processing activities are either abolished (the loss-of-function phenotype) or carried out with low fidelity (the LoFi phenotype). Conceptually, this suggests that in normal cells, RBPs act as gatekeepers maintaining proper RNA metabolism and the "balanced" proteome. From the practical standpoint, at least some LoFi phenotypes create therapeutic vulnerabilities, which are beginning to be exploited in the clinic.
Insights
Cancer-driving RNA-binding proteins (RBPs) are surprisingly common. Their mutations disrupt RNA metabolism, leading to cancer, but also create new therapeutic vulnerabilities.
Area of Science:
- Genomics
- Molecular Biology
- Cancer Research
Background:
- Large-scale sequencing projects have identified over 700 cancer-driving genes.
- RNA-binding proteins (RBPs) represent a newly recognized class of major cancer drivers.
- Over 40 RBPs involved in RNA metabolism are recurrently mutated in various cancers.
Purpose of the Study:
- To investigate the role of RNA-binding activities in the oncogenic functions of RBPs.
- To explore how mutations in RBPs affect RNA metabolism and contribute to cancer.
- To identify potential therapeutic vulnerabilities arising from altered RBP functions.
Main Methods:
- Review of existing literature on cancer-driving genes and RBPs.
- Analysis of mutation data from large cancer genomics projects.
- Focus on well-characterized RNA metabolism pathways affected by RBPs.
Main Results:
- Cancer-driving RBPs exhibit loss-of-function or low-fidelity (LoFi) phenotypes in their RNA processing activities.
- These altered RNA metabolism functions contribute to neoplastic growth.
- LoFi phenotypes in specific RBPs present exploitable therapeutic vulnerabilities.
Conclusions:
- RBPs function as critical regulators of RNA metabolism in normal cells.
- Dysregulation of RNA metabolism by mutated RBPs drives cancer development.
- Targeting RBP-associated LoFi phenotypes offers promising new cancer treatment strategies.
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