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Reducing the man-machine barrier: the Sequence Analysis Workbench.

M Bernstein1

  • 1E.I. du Pont de Nemours & Co. Inc., Wilmington, DE 19898.

Computer Applications in the Biosciences : CABIOS
|September 1, 1987
PubMed
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Scientists can directly manipulate sequence data using the Sequence Analysis Workbench. This approach bridges the gap between researchers and their data, enhancing scientific software development.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Scientific Software Engineering

Background:

  • Traditional software paradigms create a distance between scientists and their data.
  • The conventional model relies on indirect instruction, limiting direct scientific inquiry.
  • This paradigm can hinder the intuitive examination and modification of complex datasets.

Purpose of the Study:

  • To introduce an alternative software paradigm for scientific data analysis.
  • To explore the benefits of direct manipulation in scientific workflows.
  • To present the Sequence Analysis Workbench as a tool for enhanced data interaction.

Main Methods:

  • Developed experimental tools for direct manipulation of sequence data.
  • Utilized object-oriented programming for rapid tool construction.

Related Experiment Videos

  • Focused on creating an intuitive interface for scientists to interact with data.

    • Main Results:

    • The Sequence Analysis Workbench enables direct manipulation of sequence data.
    • Object-oriented programming facilitated the quick development of sophisticated tools.
    • The paradigm promotes closer scientist-data interaction and software review.

    Conclusions:

    • Direct manipulation offers a more integrated approach to scientific data analysis.
    • The Sequence Analysis Workbench serves as a practical implementation of this paradigm.
    • Object-oriented programming is key to developing flexible and reviewable scientific software.