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Updated: Oct 19, 2025

Microfluidic Mixers for Studying Protein Folding
Published on: April 10, 2012
Microsecond Dynamics During the Binding-induced Folding of an Intrinsically Disordered Protein
Sreemantee Sen1, Harish Kumar1, Jayant B Udgaonkar1
1National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India; Indian Institute of Science Education and Research, Pune, Pashan, Pune 411 008, India.
The tau protein fragment tau-K18 transitions from disordered to helical structures upon binding sodium dodecyl sulfate (SDS). This helical conformation is aggregation-competent, directly forming amyloid fibrils linked to neurodegenerative diseases.
Area of Science:
- Biochemistry
- Neuroscience
- Structural Biology
Background:
- Tau protein is intrinsically disordered and linked to neurodegenerative diseases.
- Tau's repeat domain (tau-K18) forms helical structures with lipids.
- Understanding tau's structural transitions is crucial for disease mechanisms.
Purpose of the Study:
- Investigate the mechanism of tau-K18 helical structure formation induced by sodium dodecyl sulfate (SDS).
- Characterize the intermediate states and kinetics of this disorder-to-order transition.
- Determine if the helical conformation is aggregation-competent.
Main Methods:
- Photoinduced electron transfer coupled to fluorescence correlation spectroscopy (PET-FCS) for conformational dynamics.
- Continuous flow mixer for microsecond kinetic measurements.
- Biophysical probes to study protein structure and interactions.
Main Results:
- Identified an intermediate state (I) in equilibrium with the unfolded state (U).
- Observed cooperative binding of SDS inducing a compact helical intermediate (IL5) within microseconds.
- Elucidated a U ↔ I ↔ IL5 ↔ FL5 mechanism for helical structure formation.
- Determined the final helical state (FL5) forms from IL5 with a time constant of 50-200 µs.
Conclusions:
- SDS at sub-micellar concentrations induces a rapid disorder-to-order transition in tau-K18.
- The helical conformation of tau-K18 is aggregation-competent.
- This mechanism provides insight into tau aggregation in neurodegenerative diseases.
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