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Repurposing of gastric cancer drugs against COVID-19
Charu Sonkar1, Pawan Kumar Doharey2, Anuranjan Singh Rathore3
1Department of Biosciences and Biomedical Engineering (BSBE), Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore, 453552, India.
Abstract:
Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a global pandemic. Additionally, the SARS-CoV-2 infection in the patients of Gastric Cancer (GC; the third leading cause of death in the world) pose a great challenge for the health management of the patients. Since there have been uncertainties to develop a new drug against COVID-19, there is an urgent need for repurposing drugs that can target key proteins of both SARS-CoV-2 and GC. The SARS-CoV-2-RdRp protein contains the NiRAN domain, which is known to have kinase-like folds. A docking study of the FDA approved drugs against GC was performed using AutoDock 4.2 and Glide Schrodinger suite 2019 against SARS-CoV-2-RdRp protein. MMGBSA and MD simulation studies were performed to investigate the binding and stability of the inhibitors with the target protein. In this study, we have found 12 kinase inhibitors with high binding energies namely Baricitinib, Brepocitinib, Decernotinib, Fasudil, Filgotinib, GSK2606414, Peficitinib, Ruxolitinib, Tofacitinib, Upadacitinib, Pamapimod and Ibrutinib. These FDA approved drugs against GC can play a key role in the treatment of COVID-19 patients along with GC as comorbidity. We also hypothesize that JAK, ITK, Rho-associated kinases, FGFR2, FYN, PERK, TYK2, p38-MAPK and SYK kinases can be considered as key therapeutic targets in COVID-19 treatment. Taken altogether, we have proposed the SARS-CoV-2-RdRp as a potential therapeutic target through in-silico studies. However, further in-vitro and in-vivo studies are required for the validation of the proposed targets and drugs for the treatment of COVID-19 patients already suffering from GC.
Insights
Repurposing FDA-approved gastric cancer drugs shows promise for treating COVID-19. Twelve kinase inhibitors targeting SARS-CoV-2-RdRp offer potential therapeutic strategies for patients with both conditions.
Area of Science:
- Computational drug discovery
- Virology
- Oncology
Background:
- COVID-19 pandemic caused by SARS-CoV-2 presents global health challenges.
- Co-infection with SARS-CoV-2 in Gastric Cancer (GC) patients complicates management.
- Need for drug repurposing to target shared proteins in SARS-CoV-2 and GC.
Purpose of the Study:
- To identify FDA-approved drugs for GC that can be repurposed for COVID-19 treatment.
- To investigate the potential of targeting SARS-CoV-2 RNA-dependent RNA polymerase (RdRp) protein.
- To evaluate drug candidates using in-silico methods.
Main Methods:
- Molecular docking studies using AutoDock 4.2 and Glide.
- Binding energy calculations using MMGBSA.
- Molecular dynamics (MD) simulations to assess inhibitor stability.
Main Results:
- Identified 12 kinase inhibitors with high binding energies against SARS-CoV-2-RdRp.
- Baricitinib, Ruxolitinib, and Tofacitinib among potent candidates.
- Hypothesized several kinases (JAK, FYN, PERK, etc.) as potential therapeutic targets.
Conclusions:
- SARS-CoV-2-RdRp is a potential therapeutic target for COVID-19.
- Repurposed GC drugs show promise for treating COVID-19 patients with GC comorbidity.
- Further in-vitro and in-vivo studies are necessary for validation.
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