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Automatic Classification of Thyroid Findings Using Static and Contextualized Ensemble Natural Language Processing
Dongyup Shin1, Hye Jin Kam2, Min-Seok Jeon3
1Graduate School of Information, Yonsei University, Seoul, Republic of Korea.
JMIR Medical Informatics
|September 21, 2021
Summary
This study developed an automated system using natural language processing (NLP) to classify thyroid conditions from medical records. The SCENT models achieved high accuracy, improving the detection of healthy and critical thyroid cases.
Area of Science:
- Medical Informatics
- Natural Language Processing
- Machine Learning
Background:
- Manual classification of electronic medical examination results is time-consuming and error-prone.
- Existing automated methods struggle with nonstandardized data and context.
- Need for accurate automated classification of thyroid conditions from diverse medical records.
Purpose of the Study:
- Develop deep learning models for automatic classification of 3 thyroid conditions: healthy, caution required, and critical.
- Enhance classification accuracy, particularly minimizing false negatives for healthy thyroid predictions.
- Utilize electronic medical records from 284 institutions and open-source data.
Main Methods:
- Proposed Static and Contextualized Ensemble NLP network (SCENT) systems.
- Developed ensemble models using Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), and ELECTRA.
- Created two versions: SCENT-v1 (CNN + ELECTRA) and SCENT-v2 (hierarchical CNN + LSTM + ELECTRA).
Main Results:
- SCENT-v1 achieved the highest F1 score (92.56%).
- SCENT-v2 demonstrated high recall (94.44%) and minimized misclassifications for caution-required conditions.
- SCENT-v2 achieved zero classification error for critical conditions when predicting healthy thyroid.
Conclusions:
- The SCENT models show robust classification performance for Korean medical data, addressing data imbalance and language nuances.
- SCENT-v1 highlights the benefit of combining static and contextual token representations.
- SCENT-v2 significantly improves the prediction accuracy of healthy thyroid conditions.
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