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Updated: Oct 19, 2025

CRISPR-Cas9 Mediated Gene Deletion in Human Pluripotent Stem Cells Cultured Under Feeder-Free Conditions
Published on: November 1, 2024
[7SK truncation at 128-179 nt suppresses embryonic stem cell proliferation in vitro by downregulating CDC6]
Rui Chen1, Yurong Zhang1, Peng Chen2
1First Affiliated Hospital of Xi'an Medical University, Xi'an 710077, China.
Objective:
To explore the role of small nuclear noncoding RNA 7SK in embryonic stem cell (ESCs) proliferation and the value of 7SK as a target for early diagnosis and treatment for primordial dwarfism (PD).
Methods:
ESC line R1 was transfected with the CRISPR/Cas9 system, and sequencing of the PCR product and glycerol gradient analysis were performed to identify novel 7SK deletion mutations. A lentivirus system was used to knock down cyclin-dependent kinase 9 (CDK9) in clones with 7SK deletion mutations, and the effect of CDK9 knockdown on the protein level of cell division cycle 6 (CDC6) was analyzed with Western blotting.
Results:
We identified a novel deletion mutation of 7SK at 128-179 nt in the ESCs, which resulted in deficiency of cell proliferation. 7SK truncation at 128-179 nt significantly reduced the protein expressions of La-related protein 7 (LARP7) and CDC6.
Conclusions:
7SK truncation at 128-179 nt can significantly impair proliferation of ESCs by downregulating CDC6. 7SK is a key regulator of proliferation and mediates the growth of ESCs through a mechanism dependent on CDK9 activity, suggesting the value of 7SK truncation at 128-179 nt as a potential target for early diagnosis and treatment of PD.
Insights
Small nuclear RNA 7SK truncation impairs embryonic stem cell (ESC) proliferation by downregulating CDC6. This finding highlights 7SK
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- Embryonic stem cells (ESCs) possess self-renewal and differentiation capabilities.
- Primordial dwarfism (PD) is a group of rare genetic disorders characterized by severe intrauterine and postnatal growth retardation.
- Small nuclear noncoding RNA 7SK plays a role in various cellular processes.
Purpose of the Study:
- To investigate the function of small nuclear noncoding RNA 7SK in ESC proliferation.
- To evaluate the potential of 7SK as a diagnostic and therapeutic target for primordial dwarfism (PD).
Main Methods:
- CRISPR/Cas9 gene editing was used to create 7SK deletion mutations in R1 ESCs.
- Lentivirus-mediated knockdown of cyclin-dependent kinase 9 (CDK9) was performed.
- Western blotting was employed to analyze protein expression levels, including CDC6.
Main Results:
- A novel 7SK deletion mutation (128-179 nt) was identified in ESCs, leading to deficient cell proliferation.
- 7SK truncation significantly reduced the expression of La-related protein 7 (LARP7) and cell division cycle 6 (CDC6).
Conclusions:
- 7SK truncation at 128-179 nt impairs ESC proliferation by downregulating CDC6.
- 7SK is a critical regulator of ESC proliferation, mediated by CDK9 activity.
- 7SK truncation presents a potential target for the early diagnosis and treatment of primordial dwarfism.
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