Systems approaches identify the consequences of monosomy in somatic human cells
Narendra Kumar Chunduri1, Paul Menges1, Xiaoxiao Zhang2
1Department of Molecular Genetics, TU Kaiserslautern, Kaiserslautern, Germany.
Abstract:
Chromosome loss that results in monosomy is detrimental to viability, yet it is frequently observed in cancers. How cancers survive with monosomy is unknown. Using p53-deficient monosomic cell lines, we find that chromosome loss impairs proliferation and genomic stability. Transcriptome and proteome analysis demonstrates reduced expression of genes encoded on the monosomes, which is partially compensated in some cases. Monosomy also induces global changes in gene expression. Pathway enrichment analysis reveals that genes involved in ribosome biogenesis and translation are downregulated in all monosomic cells analyzed. Consistently, monosomies display defects in protein synthesis and ribosome assembly. We further show that monosomies are incompatible with p53 expression, likely due to defects in ribosome biogenesis. Accordingly, impaired ribosome biogenesis and p53 inactivation are associated with monosomy in cancer. Our systematic study of monosomy in human cells explains why monosomy is so detrimental and reveals the importance of p53 for monosomy occurrence in cancer.
Insights
Cancer cells survive chromosome loss (monosomy) by impairing protein synthesis and disabling p53. This study reveals how cells cope with monosomy and its link to cancer progression.
Area of Science:
- Genetics
- Cancer Biology
- Molecular Biology
Background:
- Chromosome loss leading to monosomy is common in cancers but detrimental to cell viability.
- The mechanisms by which cancer cells survive monosomy remain largely unknown.
Purpose of the Study:
- To investigate how cancer cells survive monosomy.
- To understand the molecular and cellular consequences of monosomy in human cells.
- To explore the relationship between monosomy, p53, and ribosome biogenesis in cancer.
Main Methods:
- Utilized p53-deficient monosomic cell lines for experimentation.
- Performed transcriptome and proteome analysis to assess gene expression changes.
- Conducted pathway enrichment analysis to identify affected biological processes.
- Investigated protein synthesis and ribosome assembly in monosomic cells.
Main Results:
- Monosomy impairs cell proliferation and genomic stability.
- Reduced expression of genes on the affected chromosome was observed, with partial compensation in some cases.
- Monosomy globally alters gene expression, downregulating ribosome biogenesis and translation pathways.
- Monosomic cells exhibit defects in protein synthesis and ribosome assembly.
- Monosomy is incompatible with p53 expression, linked to ribosome biogenesis defects.
Conclusions:
- Impaired ribosome biogenesis and p53 inactivation are associated with monosomy in cancer.
- This study elucidates the detrimental effects of monosomy and highlights the critical role of p53 in its occurrence within cancer cells.
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