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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long Noncoding RNA MALAT1 Regulates the Progression of Atherosclerosis by miR-330-5p/NF-κB Signal Pathway
Zhifeng Shi1, Zhixiong Zheng, Xiaodan Lin
1Department of Neurology, MinDong Hospital of Ningde City, Fuan City, Fujian Province, China.
Abstract:
Long non-coding RNA metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) was reported to be related to atherosclerosis (AS) progression. However, the underlying mechanism of MALAT1 in AS remains unknown. Quantitative real-time polymerase chain reaction was performed to detect the expression of MALAT1 and miR-330-5p. Western blot was applied to assess the protein levels of cluster of differentiation 36, interleukin-1β, interleukin-6 and tumor necrosis factor-α, phosphorylation of nuclear factor kappa-B inhibitor alpha and phosphorylation of p65. Flow cytometry assay, cell counting kit 8 assay, triglyceride, and total cholesterol detection assays were used to detect the apoptosis, viability, and lipid indexes of THP-1 macrophages-derived foam cells. Online database starbasev2.0 was used to predict the binding sequences between MALAT1 and miR-330-5p and it was verified by dual-luciferase reporter system and RNA immunoprecipitation assay. Besides, an AS mice model was used to evaluate the effect of MALAT1 in vivo. As a result, MALAT1 was overexpressed, whereas miR-330-5p was downregulated in THP-1 macrophages-derived foam cells. MiR-330-5p was a target of MALAT1. MALAT1 depletion inhibited cell formation, apoptosis, and inflammation in THP-1 macrophages-derived foam cells. Besides, MALAT1 overexpression promoted the inflammation in AS mice model, which promoted the pathogenesis of AS. Furthermore, miR-330-5p regulated the nuclear factor kappa light chain enhancer of activated B cells (NF-κB) pathway in THP-1 macrophages-derived foam cells. Moreover, MALAT1 regulated NF-κB signal pathway to mediate the pathogenesis of AS by sponging miR-330-5p. MALAT1 sponges miR-330-5p to activate NF-κB signal pathway in THP-1 macrophages-derived foam cells. This finding may provide a novel biomarker for AS diagnosis.
Insights
Long non-coding RNA MALAT1 promotes atherosclerosis by sponging miR-330-5p, activating the NF-κB pathway. This reveals MALAT1 as a potential biomarker for atherosclerosis diagnosis and treatment.
Area of Science:
- Molecular Biology
- Cardiovascular Research
- RNA Biology
Background:
- Atherosclerosis (AS) is a complex cardiovascular disease.
- The role of long non-coding RNA metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) in AS pathogenesis is not fully understood.
- Investigating the molecular mechanisms underlying MALAT1's involvement in AS is crucial.
Purpose of the Study:
- To elucidate the mechanism by which MALAT1 influences atherosclerosis.
- To determine the relationship between MALAT1, miR-330-5p, and the NF-κB pathway in AS.
- To evaluate MALAT1 as a potential biomarker for AS.
Main Methods:
- Quantitative real-time PCR to measure MALAT1 and miR-330-5p expression.
- Western blot to analyze key proteins and signaling pathways (NF-κB).
- In vitro assays (foam cell models) and in vivo AS mouse models were utilized.
Main Results:
- MALAT1 was upregulated, and miR-330-5p was downregulated in foam cells.
- MALAT1 depletion reduced foam cell formation, apoptosis, and inflammation.
- MALAT1 overexpression exacerbated inflammation in AS mice, mediated by sponging miR-330-5p and activating the NF-κB pathway.
Conclusions:
- MALAT1 promotes AS pathogenesis by sponging miR-330-5p, thereby activating the NF-κB signaling pathway.
- MALAT1 plays a significant role in the development and progression of atherosclerosis.
- MALAT1 represents a potential novel biomarker for AS diagnosis.
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