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Related Concept Videos

Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
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Polygenic Traits01:18

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When more than one gene is responsible for a given phenotype, the trait is considered polygenic. Human height is a polygenic trait. Studies have uncovered hundreds of loci that influence height, and there are believed to be many more. Due to the high number of genes involved, as well as environmental and nutritional factors, height varies significantly within a given population. The distribution of height forms a bell-shaped curve, with relatively few individuals in the population at the...
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Fruits form from a mature flower ovary. As seeds develop from the ovules contained within, the ovary wall undergoes a series of complex changes to form fruit. In some fruits, such as soybeans, the ovary wall dries; in other fruits, such as grapes, it remains fleshy. In some cases, organs other than the ovary contribute to fruit formation; such fruits are called accessory fruits.
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Human Genetics01:28

Human Genetics

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Human genetics provides a profound framework for understanding the interplay between genetic predispositions and human psychology. At the heart of this discipline lies the study of how genes influence physical traits, behaviors, and susceptibility to diseases. Each person carries a unique genetic code that subtly or significantly shapes their psychological and behavioral landscape.
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Genetic Screens02:46

Genetic Screens

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Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing  genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
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Related Experiment Video

Updated: Oct 19, 2025

Determination of Self- and Inter-incompatibility Relationships in Apricot Combining Hand-Pollination, Microscopy and Genetic Analyses
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Determination of Self- and Inter-incompatibility Relationships in Apricot Combining Hand-Pollination, Microscopy and Genetic Analyses

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AprGPD: the apricot genomic and phenotypic database.

Chen Chen1,2,3, Huimin Liu1,2,3, Ningning Gou1,2,3

  • 1State Key Laboratory of Tree Genetics and Breeding, Non-Timber Forest Research and Development Center, Chinese Academy of Forestry, Zhengzhou, China.

Plant Methods
|September 24, 2021
PubMed
Summary

A new apricot genomic and phenotypic database (AprGPD) integrates diverse apricot data, including genomes and germplasms. This resource aids researchers in advancing apricot molecular breeding and understanding its genetic diversity.

Keywords:
AprGPDApricotExpressionGenomePhenotypeTranscription factorsVariation

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Last Updated: Oct 19, 2025

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Area of Science:

  • Plant genomics
  • Bioinformatics
  • Agricultural science

Background:

  • Apricot is a globally cultivated fruit crop valued for its nutrition and adaptability.
  • Extensive genomic, transcriptomic, and phenotypic data are increasingly available for apricot.
  • Existing data require integration and dissemination for efficient use.

Purpose of the Study:

  • To develop a centralized database for apricot genomic and phenotypic information.
  • To facilitate data management and accessibility for researchers.
  • To support advancements in apricot molecular breeding.

Main Methods:

  • Construction of the apricot genomic and phenotypic database (AprGPD).
  • Integration of reference genomes, germplasm data, and sequencing data (genome resequencing and RNA sequencing).
  • Implementation of user-friendly query, analysis, and visualization tools.

Main Results:

  • The AprGPD database is now available at http://apricotgpd.com.
  • It currently houses three reference genomes, 1692 germplasms, 306 genome resequencing datasets, and 90 RNA sequencing datasets.
  • Analysis of 59 transcription factor families across the three apricot genomes has been performed.

Conclusions:

  • AprGPD is structured into six modules: species, germplasm, genome, variation, product, and tools.
  • The integrated data within AprGPD will significantly benefit apricot molecular breeding efforts.
  • The database enhances the accessibility and utility of apricot genetic resources.