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Updated: Oct 19, 2025

Generating Controlled, Dynamic Chemical Landscapes to Study Microbial Behavior
Published on: January 31, 2020
Emergent probability fluxes in confined microbial navigation
Jan Cammann1,2,3, Fabian Jan Schwarzendahl3,4,5, Tanya Ostapenko3
1Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough LE11 3TU, United Kingdom.
Self-organization in microbial systems emerges from active motion and interfacial forces, even in complex geometries. Boundary curvature dictates nonequilibrium probability fluxes, guiding cell trajectories and enabling geometric control.
Area of Science:
- Microbial motility
- Active matter physics
- Complex systems
Background:
- Cellular motion appears erratic but can exhibit organization under nonequilibrium conditions.
- Current understanding of self-organization in active systems is limited to bulk or idealized geometries.
- The emergence of self-organization in complex geometries and at specific length scales remains poorly understood.
Purpose of the Study:
- To investigate how self-organization emerges in the motion of motile cells within complex microfluidic geometries.
- To determine the role of boundary curvature in organizing active cellular motion.
- To establish a link between nonequilibrium probability fluxes and global geometric properties.
Main Methods:
- Controlled microfluidic experiments to observe single-cell motion.
- Analytical calculations to model active motion and interfacial forces.
- Numerical simulations to explore self-organization in nontrivial geometries.
Main Results:
- Probability flux loops were identified as organizing principles for active motion, even at the single-cell level.
- The curvature of the boundary was found to directly influence nonequilibrium probability fluxes.
- A universal relationship between probability fluxes and global geometric properties was theoretically predicted and experimentally validated.
Conclusions:
- Self-organization in active cellular motion is achievable in complex geometries through probability flux loops.
- Boundary curvature is a critical factor in determining the direction and organization of cell movement.
- The findings enable prediction of probable cell trajectories and design of geometries for directed motion.
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