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Updated: Oct 19, 2025

Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays
Published on: October 23, 2019
Molecular basis of human ATM kinase inhibition
K Stakyte1, M Rotheneder1, K Lammens2
1Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität, Munich, Germany.
Abstract:
Human checkpoint kinase ataxia telangiectasia-mutated (ATM) plays a key role in initiation of the DNA damage response following DNA double-strand breaks. ATM inhibition is a promising approach in cancer therapy, but, so far, detailed insights into the binding modes of known ATM inhibitors have been hampered due to the lack of high-resolution ATM structures. Using cryo-EM, we have determined the structure of human ATM to an overall resolution sufficient to build a near-complete atomic model and identify two hitherto unknown zinc-binding motifs. We determined the structure of the kinase domain bound to ATPγS and to the ATM inhibitors KU-55933 and M4076 at 2.8 Å, 2.8 Å and 3.0 Å resolution, respectively. The mode of action and selectivity of the ATM inhibitors can be explained by structural comparison and provide a framework for structure-based drug design.
Insights
Researchers determined the high-resolution structure of human ataxia telangiectasia-mutated (ATM) kinase, revealing novel zinc-binding motifs and providing insights into ATM inhibitor binding for cancer therapy development.
Area of Science:
- Biochemistry
- Structural Biology
- Cancer Research
Background:
- The ataxia telangiectasia-mutated (ATM) kinase is crucial for DNA double-strand break repair.
- ATM inhibition is a targeted cancer therapy strategy.
- Lack of high-resolution ATM structures has limited understanding of inhibitor binding modes.
Purpose of the Study:
- To determine the high-resolution structure of human ATM.
- To elucidate the binding mechanisms of ATM inhibitors.
- To provide a structural basis for designing novel ATM-targeted cancer drugs.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was employed to determine ATM structures.
- Structures were resolved for ATM kinase domain bound to ATPγS, KU-55933, and M4076.
- High-resolution structural analysis enabled atomic model building.
Main Results:
- Near-complete atomic model of human ATM was achieved.
- Two previously unknown zinc-binding motifs within ATM were identified.
- Structural details of KU-55933 and M4076 binding to ATM were elucidated at 2.8-3.0 Å resolution.
Conclusions:
- The determined ATM structures explain inhibitor action and selectivity.
- These findings offer a framework for structure-based design of improved ATM inhibitors.
- This research advances the development of ATM-targeted cancer therapies.
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