Related Experiment Video
Updated: Oct 19, 2025

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
Published on: May 2, 2018
Using transects to disentangle the environmental drivers of plant-microbiome assembly
Jana Mittelstrass1, F Gianluca Sperone2, Matthew W Horton1
1Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.
Environmental factors like soil nutrients and temperature significantly shape plant microbiomes in wild strawberry plants across continents. Understanding these drivers is key to predicting microbial contributions to plant productivity.
Area of Science:
- Plant-microbiome interactions
- Ecology
- Microbial ecology
Background:
- Environmental heterogeneity drives plant-microbiome assembly, but specific climate and soil drivers are poorly understood.
- The wild strawberry (Fragaria vesca) serves as a model system to investigate plant microbiome formation.
Purpose of the Study:
- To identify key environmental factors influencing the bacterial and fungal communities associated with wild strawberry plants.
- To determine if these factors are consistent across different geographic populations (North America and Europe).
Main Methods:
- Examined bacterial and fungal communities colonizing wild strawberry plants.
- Utilized transects as replicates across North American and European populations.
- Analyzed environmental data including soil nutrients and temperature.
Main Results:
- Found significant overlap in environmental conditions predicting plant microbiome similarity and richness across continents.
- Soil nutrients were identified as key predictors, replicating across diverse locations.
- Temperature emerged as a primary predictor for bacterial and fungal diversity in both leaf and root microbiomes.
Conclusions:
- A limited set of environmental factors and their interactions consistently shape plant microbiome formation.
- These findings have implications for predicting microbial contributions to plant productivity in changing environments.
- Highlights the role of climate and soil conditions in structuring plant-associated microbial communities.
More Related Videos
07:00Microbiota of Attine Ants' Gardens: Visualizing a Microbial Landscape by Scanning Electron Microscopy
Published on: October 4, 2024
12:05A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
Published on: June 27, 2025