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Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors.

Vishnu M Bashyam1, Jimit Doshi1, Guray Erus1

  • 1Artificial Intelligence in Biomedical Imaging Lab, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

Journal of Magnetic Resonance Imaging : JMRI
|September 26, 2021
PubMed
Summary

Generative adversarial network (GAN)-based harmonization significantly improved deep learning brain age prediction across multiple sites. This method enhances cross-site generalizability, a key step for clinical adoption of medical imaging AI.

Keywords:
StarGANdeep learningharmonization

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Area of Science:

  • Medical Imaging
  • Artificial Intelligence
  • Neuroscience

Background:

  • Deep learning in medical imaging faces challenges in clinical adoption due to poor generalization across different devices and protocols.
  • Brain age prediction models can serve as biomarkers for brain health, but require improved cross-site generalizability.

Purpose of the Study:

  • To develop and evaluate a deep learning-based image harmonization method.
  • The goal is to enhance the cross-site generalizability of deep learning models for brain age prediction.

Main Methods:

  • Retrospective analysis of 8,876 subjects from six sites using brain imaging data (1.5T and 3T MRI).
  • StarGAN v2 was employed for image harmonization, mapping diverse datasets to a reference domain.
  • Age prediction model performance was evaluated using harmonized, histogram-matched, and unharmonized data.

Main Results:

  • Generative adversarial network (GAN)-based harmonization reduced the mean absolute error (MAE) of brain age prediction from 15.81 years to 7.21 years overall.
  • In multisite testing, GAN-based harmonization improved MAE from 9.78 years to 5.32 years.
  • This demonstrates substantial improvements in out-of-sample prediction accuracy.

Conclusions:

  • GAN-based medical image harmonization shows promise for improving cross-site deep learning generalization.
  • This technique is a potential tool to overcome limitations in current AI-based medical imaging applications.
  • Further research is warranted to fully explore its clinical utility.