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Structure of the Acinetobacter baumannii PmrA receiver domain and insights into clinical mutants affecting DNA
Abstract:
Acinetobacter baumannii is an insidious emerging nosocomial pathogen that has developed resistance to all available antimicrobials, including the last resort antibiotic, colistin. Colistin resistance often occurs due to mutations in the PmrAB two-component regulatory system. To better understand the regulatory mechanisms contributing to colistin resistance, we have biochemically characterized the A. baumannii PmrA response regulator. Initial DNA-binding analysis shows that A. baumannii PmrA bound to the Klebsiella pneumoniae PmrA box motif. This prompted analysis of the putative A. baumannii PmrAB regulon that indicated that the A. baumannii PmrA consensus box is 5'-HTTAAD N5 HTTAAD. Additionally, we provide the first structural information for the A. baumannii PmrA N-terminal domain through X-ray crystallography and we present a full-length model using molecular modelling. From these studies, we were able to infer the effects of two critical PmrA mutations, PmrA::I13M and PmrA::P102R, both of which confer increased colistin resistance. Based on these data, we suggest structural and dynamic reasons for how these mutations can affect PmrA function and hence encourage resistive traits. Understanding these mechanisms will aid in the development of new targeted antimicrobial therapies. Graphical Abstract.
Insights
Acinetobacter baumannii PmrA protein mutations enhance colistin resistance. Understanding these PmrA structural changes helps develop new antimicrobial therapies against this nosocomial pathogen.
Area of Science:
- Microbiology
- Molecular Biology
- Structural Biology
Background:
- Acinetobacter baumannii is a critical nosocomial pathogen with emerging resistance to colistin, a last-resort antibiotic.
- Colistin resistance is frequently linked to mutations in the PmrAB two-component regulatory system.
- Understanding the PmrAB system's regulation is crucial for combating antibiotic resistance.
Purpose of the Study:
- To biochemically characterize the Acinetobacter baumannii PmrA response regulator.
- To elucidate the DNA-binding motif and regulon of the A. baumannii PmrAB system.
- To determine the structural basis of colistin resistance conferred by PmrA mutations.
Main Methods:
- Biochemical characterization of Acinetobacter baumannii PmrA.
- DNA-binding analysis using the Klebsiella pneumoniae PmrA box motif.
- X-ray crystallography for N-terminal domain structure determination.
- Molecular modeling for full-length PmrA structure and mutation analysis.
Main Results:
- A. baumannii PmrA binds to a specific DNA motif (5'-HTTAAD N5 HTTAAD).
- The first structural information of the A. baumannii PmrA N-terminal domain was obtained.
- Two mutations (PmrA::I13M and PmrA::P102R) were identified to confer increased colistin resistance.
- Structural and dynamic insights into how these mutations affect PmrA function were inferred.
Conclusions:
- The PmrAB system plays a key role in Acinetobacter baumannii colistin resistance.
- Structural and functional characterization of PmrA provides a basis for understanding resistance mechanisms.
- These findings can guide the development of novel antimicrobial strategies against resistant A. baumannii.
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